Wall clock time and date at job start Mon Mar 30 2020 02:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99866 * 2 1 4 4 H 1.08996 * 112.85126 * 341.20002 * 3 2 1 5 5 C 1.53786 * 113.61401 * 112.50835 * 3 2 1 6 6 C 1.53781 * 87.08386 * 139.97869 * 5 3 2 7 7 H 1.08998 * 113.69009 * 89.12509 * 6 5 3 8 8 N 1.46898 * 113.61537 * 220.01929 * 6 5 3 9 9 C 1.46904 * 110.99723 * 289.28520 * 8 6 5 10 10 C 1.46892 * 111.00011 * 165.33502 * 8 6 5 11 11 C 1.50705 * 109.46959 * 189.99924 * 10 8 6 12 12 H 1.07998 * 120.00000 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99900 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00297 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00002 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46921 * 89.99824 * 15 13 11 17 17 H 1.48498 * 109.46901 * 210.00129 * 15 13 11 18 18 H 1.48499 * 109.46803 * 330.00063 * 15 13 11 19 19 C 1.53782 * 87.07936 * 334.56777 * 6 5 3 20 20 H 1.08997 * 109.46850 * 59.99593 * 1 2 3 21 21 H 1.08997 * 109.46925 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46835 * 300.00225 * 1 2 3 23 23 H 1.09001 * 113.61274 * 25.42855 * 5 3 2 24 24 H 1.08996 * 113.61023 * 254.52874 * 5 3 2 25 25 H 1.09002 * 109.46707 * 54.81971 * 9 8 6 26 26 H 1.09000 * 109.47120 * 174.81775 * 9 8 6 27 27 H 1.08997 * 109.47201 * 294.81961 * 9 8 6 28 28 H 1.09005 * 109.47101 * 309.99653 * 10 8 6 29 29 H 1.08998 * 109.47471 * 70.00076 * 10 8 6 30 30 H 0.96999 * 120.00075 * 179.97438 * 14 13 11 31 31 H 1.09000 * 113.61758 * 139.98195 * 19 6 5 32 32 H 1.08999 * 113.61443 * 270.79714 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7536 1.6489 1.3017 6 6 3.8228 2.3181 0.4222 7 1 3.6236 3.3694 0.2143 8 7 5.1973 2.0779 0.8815 9 6 5.4713 2.8075 2.1267 10 6 6.1700 2.4317 -0.1608 11 6 7.5386 1.9480 0.2443 12 1 7.6725 1.4300 1.1825 13 6 8.6199 2.1668 -0.5827 14 7 8.4571 2.7981 -1.7250 15 14 10.3165 1.5680 -0.0802 16 1 10.5241 0.1875 -0.5865 17 1 11.3491 2.4668 -0.6555 18 1 10.4247 1.5736 1.4008 19 6 3.3756 1.3719 -0.7045 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.1168 0.7739 1.8409 24 1 2.2142 2.3476 1.9412 25 1 4.7236 2.5434 2.8746 26 1 6.4624 2.5405 2.4937 27 1 5.4313 3.8799 1.9358 28 1 5.8821 1.9615 -1.1012 29 1 6.1899 3.5142 -0.2870 30 1 9.2178 2.9523 -2.3066 31 1 3.3383 1.8471 -1.6848 32 1 3.9098 0.4219 -0.7148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307994769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:30 Heat of formation + Delta-G solvation = -43.553953 kcal Electronic energy + Delta-G solvation = -12937.608542 eV Core-core repulsion = 10705.225932 eV Total energy + Delta-G solvation = -2232.382610 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.58516 -38.00545 -35.76510 -34.20026 -29.37708 -27.83616 -27.18485 -26.06909 -24.61028 -22.35379 -20.38251 -18.52582 -17.77646 -16.73975 -16.62998 -16.12485 -15.91054 -15.18655 -14.90389 -14.67380 -13.91561 -13.37142 -13.15979 -13.04734 -12.81266 -12.72510 -12.47220 -12.38695 -12.05491 -11.91663 -11.68645 -11.35089 -11.08263 -10.61256 -10.35272 -9.01959 -8.20207 -6.30314 1.40875 1.42977 1.53858 2.40617 2.87105 3.12306 3.50622 3.63791 3.76012 3.91041 3.97245 4.37404 4.54748 4.60927 4.62801 4.72305 4.79524 4.88821 4.89689 5.04561 5.06317 5.15985 5.20054 5.34264 5.35794 5.67294 6.07897 6.34102 6.39872 6.69692 6.86276 7.39459 8.91089 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059872 B = 0.007313 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.552302 B = 3828.112760 C = 3980.023925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.077 3.923 4 H 0.112 0.888 5 C -0.127 4.127 6 C 0.044 3.956 7 H 0.058 0.942 8 N -0.539 5.539 9 C 0.043 3.957 10 C 0.208 3.792 11 C -0.525 4.525 12 H 0.062 0.938 13 C 0.001 3.999 14 N -0.936 5.936 15 Si 0.971 3.029 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.129 4.129 20 H 0.051 0.949 21 H 0.094 0.906 22 H 0.053 0.947 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.009 0.991 28 H 0.007 0.993 29 H -0.041 1.041 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 -1.605 4.907 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.019 3.981 4 H 0.130 0.870 5 C -0.164 4.164 6 C -0.065 4.065 7 H 0.076 0.924 8 N -0.263 5.263 9 C -0.105 4.105 10 C 0.082 3.918 11 C -0.564 4.564 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.795 3.205 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.167 4.167 20 H 0.070 0.930 21 H 0.113 0.887 22 H 0.072 0.928 23 H 0.101 0.899 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.025 0.975 29 H -0.023 1.023 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.617 -2.211 4.861 14.627 hybrid contribution 0.893 0.979 -0.422 1.390 sum -12.725 -1.232 4.439 13.533 Atomic orbital electron populations 1.22996 0.79614 1.03763 1.00952 1.87949 1.21578 1.27924 1.94669 1.23530 0.93003 0.85390 0.96206 0.87035 1.23394 0.95412 1.00720 0.96924 1.22913 0.89174 0.96621 0.97758 0.92405 1.62243 1.01623 1.57138 1.05302 1.22149 1.01734 0.94526 0.92137 1.19351 0.90612 0.91731 0.90134 1.21501 0.93055 1.36404 1.05413 0.92016 1.25929 1.03633 0.95325 0.94824 1.70089 1.32456 1.43021 1.12045 0.85365 0.78212 0.78134 0.78795 1.19918 1.20630 1.18802 1.23195 0.96154 0.99824 0.97555 0.93013 0.88728 0.92824 0.89892 0.89313 0.90233 0.92606 0.97242 0.97529 1.02311 0.92687 0.91658 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.85 113.37 1.23 1.65 16 2 O -0.40 -11.38 10.71 -148.98 -1.60 -12.98 16 3 C 0.08 2.11 4.31 31.12 0.13 2.25 16 4 H 0.11 2.40 7.87 -2.39 -0.02 2.39 16 5 C -0.13 -3.66 6.95 31.12 0.22 -3.45 16 6 C 0.04 1.62 3.17 45.44 0.14 1.76 16 7 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 8 N -0.54 -24.30 4.69 -898.51 -4.22 -28.52 16 9 C 0.04 1.70 9.28 127.69 1.18 2.88 16 10 C 0.21 11.51 4.65 85.56 0.40 11.91 16 11 C -0.53 -30.77 8.53 25.60 0.22 -30.56 16 12 H 0.06 3.55 7.10 -2.91 -0.02 3.53 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.94 -57.54 13.29 21.45 0.28 -57.26 16 15 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.13 -4.61 6.74 31.12 0.21 -4.40 16 20 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.57 7.53 -2.39 -0.02 2.55 16 26 H 0.06 2.37 6.89 -2.39 -0.02 2.35 16 27 H 0.01 0.36 8.13 -2.39 -0.02 0.34 16 28 H 0.01 0.39 7.31 -2.38 -0.02 0.37 16 29 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -67.00 265.88 1.76 -65.24 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.06 Total: 3.71 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.20 Total: -17.46 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -3.93 Total: -85.77 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.60 Total: -12.98 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -67.00 1.76 -65.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307994769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.691 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds