Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47114 * 2 1 4 4 C 1.46905 * 110.99775 * 297.31622 * 3 2 1 5 5 C 1.50703 * 109.47096 * 292.65785 * 4 3 2 6 6 H 1.08006 * 119.99616 * 355.01625 * 5 4 3 7 7 C 1.37875 * 120.00294 * 175.01156 * 5 4 3 8 8 N 1.31514 * 119.99659 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47079 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46694 * 120.00020 * 9 7 5 12 12 H 1.48495 * 109.47376 * 240.00394 * 9 7 5 13 13 C 1.46900 * 111.00008 * 61.26222 * 3 2 1 14 14 C 1.53006 * 109.46963 * 66.05362 * 13 3 2 15 15 C 1.54026 * 113.81935 * 86.48934 * 14 13 3 16 16 O 1.44564 * 85.38346 * 136.86567 * 15 14 13 17 17 C 1.44172 * 93.32660 * 335.80394 * 16 15 14 18 18 H 1.09005 * 109.46894 * 179.37936 * 1 2 3 19 19 H 1.08993 * 109.47204 * 299.37562 * 1 2 3 20 20 H 1.08998 * 109.47551 * 59.38187 * 1 2 3 21 21 H 1.08993 * 109.47520 * 240.00096 * 2 1 3 22 22 H 1.09004 * 109.47505 * 119.99486 * 2 1 3 23 23 H 1.08998 * 109.47174 * 52.65896 * 4 3 2 24 24 H 1.09004 * 109.47126 * 172.65919 * 4 3 2 25 25 H 0.97003 * 119.99465 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.47231 * 306.04957 * 13 3 2 27 27 H 1.09001 * 109.47192 * 186.04883 * 13 3 2 28 28 H 1.09005 * 112.99192 * 314.66164 * 14 13 3 29 29 H 1.09006 * 113.86706 * 251.07467 * 15 14 13 30 30 H 1.09001 * 113.86209 * 22.77755 * 15 14 13 31 31 H 1.09000 * 113.86467 * 270.04329 * 17 16 15 32 32 H 1.09001 * 113.98170 * 138.35334 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6017 2.0911 -1.2186 5 6 2.3020 1.4924 -2.4112 6 1 3.0483 0.7246 -2.2699 7 6 1.9898 1.9248 -3.6827 8 7 1.0813 2.8600 -3.8546 9 14 2.8584 1.1832 -5.1609 10 1 3.8299 0.1584 -4.7015 11 1 1.8575 0.5496 -6.0564 12 1 3.5776 2.2517 -5.8999 13 6 1.5735 2.1011 1.2025 14 6 2.2311 1.4827 2.4378 15 6 3.6201 2.0650 2.7603 16 8 3.1708 2.0681 4.1344 17 6 1.7776 2.1158 3.7667 18 1 -0.3633 -1.0277 -0.0111 19 1 -0.3633 0.5041 0.8955 20 1 -0.3634 0.5234 -0.8843 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 0.5234 1.9932 -1.3435 24 1 1.8636 3.1459 -1.1352 25 1 0.8620 3.1644 -4.7491 26 1 0.4898 2.0235 1.2905 27 1 1.8576 3.1507 1.1268 28 1 2.2001 0.3931 2.4362 29 1 4.4429 1.3772 2.5649 30 1 3.7873 3.0604 2.3488 31 1 1.3836 3.1267 3.6617 32 1 1.1383 1.4692 4.3678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308025595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = -11.754042 kcal Electronic energy + Delta-G solvation = -13136.130027 eV Core-core repulsion = 10905.126365 eV Total energy + Delta-G solvation = -2231.003662 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.11512 -37.05465 -32.68707 -30.81669 -29.22792 -26.64798 -26.26502 -24.09471 -23.06665 -20.13478 -19.06109 -16.35695 -16.17624 -15.69913 -15.17479 -14.78890 -14.63626 -14.15119 -12.96173 -12.77339 -12.46217 -12.13085 -11.85707 -11.50936 -11.21239 -10.93485 -10.79718 -10.60656 -10.47720 -10.25621 -10.04475 -9.66437 -9.45273 -9.13895 -8.44134 -7.18481 -6.03442 -4.04347 3.30005 3.37696 3.42499 3.91631 4.38173 4.50248 4.98691 5.24631 5.32015 5.40105 5.52228 5.66577 5.71906 5.77709 5.88645 6.03093 6.04074 6.16596 6.30055 6.32509 6.44955 6.51339 6.68337 6.89425 7.29673 7.42972 7.81171 8.09516 8.19363 8.55351 9.04333 9.60013 11.07239 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.052311 B = 0.008131 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.126767 B = 3442.719527 C = 3586.579961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.534 5.534 4 C 0.187 3.813 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.052 3.948 14 C -0.147 4.147 15 C 0.049 3.951 16 O -0.394 6.394 17 C 0.036 3.964 18 H 0.046 0.954 19 H 0.044 0.956 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.003 0.997 24 H 0.023 0.977 25 H 0.260 0.740 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 -2.785 10.148 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.069 4.069 3 N -0.257 5.257 4 C 0.062 3.938 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.077 4.077 14 C -0.165 4.165 15 C -0.028 4.028 16 O -0.313 6.313 17 C -0.041 4.041 18 H 0.065 0.935 19 H 0.063 0.937 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.070 0.930 23 H 0.021 0.979 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.492 -2.694 10.250 10.609 hybrid contribution -0.672 -0.258 -1.135 1.344 sum -0.180 -2.952 9.115 9.583 Atomic orbital electron populations 1.22388 0.99518 1.00967 1.01942 1.21993 0.92034 0.91663 1.01245 1.62346 1.59052 1.01855 1.02485 1.19794 0.94849 0.93680 0.85434 1.21197 1.21523 1.21407 0.90129 0.91866 1.24989 0.95341 0.95293 0.99064 1.69969 1.32316 1.29448 1.22203 0.86469 0.79472 0.79083 0.82574 1.19667 1.21160 1.21047 1.22149 0.96960 0.98080 0.90477 1.24331 0.95745 1.01911 0.94544 1.24008 0.97558 1.00918 0.80283 1.89666 1.19509 1.95694 1.26411 1.23951 0.85068 1.00460 0.94658 0.93462 0.93692 0.91326 0.90101 0.93007 0.97931 0.95845 0.93034 0.94940 0.91304 0.88115 0.89255 0.89997 0.90413 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.26 37.16 0.34 -2.99 16 2 C 0.06 1.11 5.71 -3.82 -0.02 1.09 16 3 N -0.53 -11.08 4.69 -236.06 -1.11 -12.19 16 4 C 0.19 4.75 4.54 -4.97 -0.02 4.73 16 5 C -0.50 -13.93 8.39 -34.44 -0.29 -14.22 16 6 H 0.06 1.75 7.40 -52.48 -0.39 1.36 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.05 0.90 4.58 -3.82 -0.02 0.88 16 14 C -0.15 -2.13 3.92 -89.55 -0.35 -2.48 16 15 C 0.05 0.71 8.79 37.64 0.33 1.04 16 16 O -0.39 -6.03 12.47 -35.23 -0.44 -6.47 16 17 C 0.04 0.46 8.79 37.64 0.33 0.79 16 18 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 19 H 0.04 0.73 6.33 -51.93 -0.33 0.40 16 20 H 0.07 1.41 6.28 -51.93 -0.33 1.09 16 21 H 0.08 1.67 6.98 -51.93 -0.36 1.31 16 22 H 0.05 0.85 6.26 -51.93 -0.33 0.53 16 23 H 0.00 0.08 6.02 -51.93 -0.31 -0.23 16 24 H 0.02 0.64 7.91 -51.93 -0.41 0.23 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.55 6.05 -51.93 -0.31 0.24 16 27 H 0.07 1.20 7.65 -51.93 -0.40 0.80 16 28 H 0.10 1.47 6.28 -51.93 -0.33 1.14 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 31 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 256.66 15.07 3.87 3.87 Total: -1.00 -29.45 256.66 -6.48 -35.94 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.73 Total: -2.16 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 0.21 Total: -9.74 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.37 Total: -37.92 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.44 Total: -6.47 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.45 -6.48 -35.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308025595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.184 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds