Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47114 * 2 1 4 4 C 1.46905 * 110.99775 * 297.31622 * 3 2 1 5 5 C 1.50703 * 109.47096 * 292.65785 * 4 3 2 6 6 H 1.08006 * 119.99616 * 355.01625 * 5 4 3 7 7 C 1.37875 * 120.00294 * 175.01156 * 5 4 3 8 8 N 1.31514 * 119.99659 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47079 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46694 * 120.00020 * 9 7 5 12 12 H 1.48495 * 109.47376 * 240.00394 * 9 7 5 13 13 C 1.46900 * 111.00008 * 61.26222 * 3 2 1 14 14 C 1.53006 * 109.46963 * 66.05362 * 13 3 2 15 15 C 1.54026 * 113.81935 * 86.48934 * 14 13 3 16 16 O 1.44564 * 85.38346 * 136.86567 * 15 14 13 17 17 C 1.44172 * 93.32660 * 335.80394 * 16 15 14 18 18 H 1.09005 * 109.46894 * 179.37936 * 1 2 3 19 19 H 1.08993 * 109.47204 * 299.37562 * 1 2 3 20 20 H 1.08998 * 109.47551 * 59.38187 * 1 2 3 21 21 H 1.08993 * 109.47520 * 240.00096 * 2 1 3 22 22 H 1.09004 * 109.47505 * 119.99486 * 2 1 3 23 23 H 1.08998 * 109.47174 * 52.65896 * 4 3 2 24 24 H 1.09004 * 109.47126 * 172.65919 * 4 3 2 25 25 H 0.97003 * 119.99465 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.47231 * 306.04957 * 13 3 2 27 27 H 1.09001 * 109.47192 * 186.04883 * 13 3 2 28 28 H 1.09005 * 112.99192 * 314.66164 * 14 13 3 29 29 H 1.09006 * 113.86706 * 251.07467 * 15 14 13 30 30 H 1.09001 * 113.86209 * 22.77755 * 15 14 13 31 31 H 1.09000 * 113.86467 * 270.04329 * 17 16 15 32 32 H 1.09001 * 113.98170 * 138.35334 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6017 2.0911 -1.2186 5 6 2.3020 1.4924 -2.4112 6 1 3.0483 0.7246 -2.2699 7 6 1.9898 1.9248 -3.6827 8 7 1.0813 2.8600 -3.8546 9 14 2.8584 1.1832 -5.1609 10 1 3.8299 0.1584 -4.7015 11 1 1.8575 0.5496 -6.0564 12 1 3.5776 2.2517 -5.8999 13 6 1.5735 2.1011 1.2025 14 6 2.2311 1.4827 2.4378 15 6 3.6201 2.0650 2.7603 16 8 3.1708 2.0681 4.1344 17 6 1.7776 2.1158 3.7667 18 1 -0.3633 -1.0277 -0.0111 19 1 -0.3633 0.5041 0.8955 20 1 -0.3634 0.5234 -0.8843 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 0.5234 1.9932 -1.3435 24 1 1.8636 3.1459 -1.1352 25 1 0.8620 3.1644 -4.7491 26 1 0.4898 2.0235 1.2905 27 1 1.8576 3.1507 1.1268 28 1 2.2001 0.3931 2.4362 29 1 4.4429 1.3772 2.5649 30 1 3.7873 3.0604 2.3488 31 1 1.3836 3.1267 3.6617 32 1 1.1383 1.4692 4.3678 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308025595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = -32.539565 kcal Electronic energy + Delta-G solvation = -13137.031355 eV Core-core repulsion = 10905.126365 eV Total energy + Delta-G solvation = -2231.904990 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.27861 -38.65609 -34.77600 -32.15757 -30.91994 -28.42684 -27.35803 -25.54569 -24.93925 -21.60055 -20.44213 -18.37552 -17.42703 -16.99609 -16.75702 -16.29833 -16.05949 -15.84060 -14.61639 -14.48352 -13.71653 -13.53297 -13.41114 -13.11137 -12.88255 -12.75068 -12.55415 -12.25082 -11.94983 -11.82919 -11.55210 -11.33033 -11.02291 -10.59199 -10.55433 -8.87920 -8.18243 -6.27313 1.40627 1.41739 1.54761 2.41116 2.82259 3.14458 3.17538 3.66360 3.94806 4.27418 4.32328 4.37977 4.47552 4.51150 4.60716 4.67897 4.74276 4.78544 5.01089 5.04383 5.16354 5.21959 5.23245 5.30879 5.40595 5.52891 5.69873 6.10662 6.39484 6.70164 6.90410 7.42278 8.92338 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.052311 B = 0.008131 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.126767 B = 3442.719527 C = 3586.579961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 N -0.542 5.542 4 C 0.203 3.797 5 C -0.517 4.517 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.055 3.945 14 C -0.141 4.141 15 C 0.046 3.954 16 O -0.410 6.410 17 C 0.043 3.957 18 H 0.071 0.929 19 H 0.061 0.939 20 H 0.030 0.970 21 H 0.057 0.943 22 H 0.084 0.916 23 H -0.020 1.020 24 H -0.005 1.005 25 H 0.263 0.737 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -3.902 10.991 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.069 4.069 3 N -0.265 5.265 4 C 0.076 3.924 5 C -0.556 4.556 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.073 4.073 14 C -0.160 4.160 15 C -0.030 4.030 16 O -0.329 6.329 17 C -0.034 4.034 18 H 0.090 0.910 19 H 0.080 0.920 20 H 0.049 0.951 21 H 0.076 0.924 22 H 0.103 0.897 23 H -0.002 1.002 24 H 0.013 0.987 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.781 -3.821 11.116 11.780 hybrid contribution -0.781 0.100 -1.334 1.549 sum 0.001 -3.720 9.781 10.465 Atomic orbital electron populations 1.22278 0.98518 1.02216 1.00863 1.22030 0.92875 0.90373 1.01671 1.62237 1.59548 1.02749 1.01967 1.19426 0.93178 0.92463 0.87294 1.21497 1.21502 1.21288 0.91289 0.92146 1.25865 0.96015 0.95647 1.02136 1.70089 1.33724 1.30767 1.23011 0.85396 0.78446 0.78400 0.78758 1.18796 1.20530 1.20573 1.22184 0.97500 0.97607 0.90056 1.24299 0.95765 1.02107 0.93837 1.24060 0.97785 1.01065 0.80130 1.89658 1.20861 1.95791 1.26639 1.24112 0.84435 1.01434 0.93403 0.90971 0.92038 0.95080 0.92434 0.89735 1.00203 0.98662 0.92839 0.94476 0.92152 0.87536 0.88691 0.90165 0.89407 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.12 9.26 71.98 0.67 -5.45 16 2 C 0.06 2.13 5.71 86.30 0.49 2.62 16 3 N -0.54 -22.35 4.69 -900.76 -4.23 -26.58 16 4 C 0.20 10.56 4.54 85.56 0.39 10.95 16 5 C -0.52 -29.05 8.39 25.60 0.21 -28.83 16 6 H 0.06 3.35 7.40 -2.91 -0.02 3.33 16 7 C 0.00 0.06 5.46 84.65 0.46 0.52 16 8 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 9 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 C 0.05 1.83 4.58 86.31 0.40 2.22 16 14 C -0.14 -3.79 3.92 -10.10 -0.04 -3.82 16 15 C 0.05 1.25 8.79 72.29 0.64 1.89 16 16 O -0.41 -11.60 12.47 -148.98 -1.86 -13.45 16 17 C 0.04 0.98 8.79 72.29 0.64 1.62 16 18 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 19 H 0.06 1.86 6.33 -2.39 -0.02 1.85 16 20 H 0.03 1.28 6.28 -2.39 -0.02 1.26 16 21 H 0.06 2.36 6.98 -2.39 -0.02 2.34 16 22 H 0.08 2.54 6.26 -2.39 -0.01 2.53 16 23 H -0.02 -1.10 6.02 -2.39 -0.01 -1.12 16 24 H 0.00 -0.27 7.91 -2.38 -0.02 -0.29 16 25 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 26 H 0.04 1.21 6.05 -2.39 -0.01 1.20 16 27 H 0.06 2.10 7.65 -2.39 -0.02 2.08 16 28 H 0.11 2.75 6.28 -2.38 -0.01 2.73 16 29 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.08 2.20 7.92 -2.39 -0.02 2.18 16 31 H 0.09 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -63.14 256.66 1.17 -61.98 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.09 Total: 5.83 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 3.85 Total: -18.29 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -3.94 Total: -82.33 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.86 Total: -13.45 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -63.14 1.17 -61.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308025595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.437 kcal (2) G-P(sol) polarization free energy of solvation -63.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds