Wall clock time and date at job start Mon Mar 30 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99745 * 2 1 4 4 C 1.53002 * 110.01824 * 56.57204 * 3 2 1 5 5 N 1.46494 * 109.47112 * 59.94448 * 4 3 2 6 6 C 1.36941 * 119.99710 * 174.87256 * 5 4 3 7 7 H 1.07992 * 120.00065 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99710 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99984 * 359.72703 * 8 6 5 10 10 Si 1.86801 * 119.99755 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47146 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47097 * 120.00253 * 10 8 6 13 13 H 1.48499 * 109.47125 * 240.00116 * 10 8 6 14 14 C 1.54276 * 110.03111 * 177.95916 * 3 2 1 15 15 C 1.54967 * 104.15654 * 95.75141 * 14 3 2 16 16 C 1.54888 * 102.77667 * 37.89121 * 15 14 3 17 17 C 1.53876 * 110.03364 * 295.17554 * 3 2 1 18 18 H 1.09001 * 109.47005 * 294.04903 * 1 2 3 19 19 H 1.08997 * 109.47146 * 54.04715 * 1 2 3 20 20 H 1.08998 * 109.46904 * 174.04931 * 1 2 3 21 21 H 1.09007 * 109.46539 * 299.94261 * 4 3 2 22 22 H 1.09003 * 109.46981 * 179.97438 * 4 3 2 23 23 H 0.96996 * 120.00277 * 354.87080 * 5 4 3 24 24 H 0.97001 * 119.99803 * 180.02562 * 9 8 6 25 25 H 1.08993 * 110.48418 * 214.40152 * 14 3 2 26 26 H 1.08998 * 110.48323 * 337.05007 * 14 3 2 27 27 H 1.08999 * 110.72367 * 279.57518 * 15 14 3 28 28 H 1.09005 * 110.75739 * 156.22278 * 15 14 3 29 29 H 1.09004 * 110.48630 * 203.39783 * 16 15 14 30 30 H 1.08998 * 110.48993 * 80.76009 * 16 15 14 31 31 H 1.08997 * 110.02885 * 359.95273 * 17 3 2 32 32 H 1.08997 * 110.02710 * 121.38316 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4997 2.1061 1.1998 5 7 1.8647 1.4151 2.4389 6 6 1.6046 1.9984 3.6502 7 1 1.1300 2.9676 3.6920 8 6 1.9500 1.3434 4.8244 9 7 2.5226 0.1594 4.7735 10 14 1.5958 2.1394 6.4768 11 1 0.9459 3.4572 6.2622 12 1 0.6908 1.2640 7.2641 13 1 2.8686 2.3295 7.2177 14 6 3.5484 1.1992 0.0516 15 6 3.9854 1.3016 -1.4316 16 6 3.0020 2.3510 -2.0068 17 6 1.6627 2.0372 -1.3083 18 1 -0.3633 0.4188 0.9385 19 1 -0.3633 0.6033 -0.8319 20 1 -0.3633 -1.0221 -0.1065 21 1 0.4151 2.1974 1.1406 22 1 1.9486 3.0993 1.1913 23 1 2.2906 0.5445 2.4013 24 1 2.7637 -0.2984 5.5940 25 1 3.9684 2.0216 0.6306 26 1 3.8505 0.2407 0.4737 27 1 3.8657 0.3428 -1.9361 28 1 5.0142 1.6538 -1.5079 29 1 2.9062 2.2327 -3.0861 30 1 3.3334 3.3597 -1.7606 31 1 1.0515 1.3962 -1.9436 32 1 1.1304 2.9626 -1.0885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308085824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:49 Heat of formation + Delta-G solvation = -46.564607 kcal Electronic energy + Delta-G solvation = -13427.353576 eV Core-core repulsion = 11194.840415 eV Total energy + Delta-G solvation = -2232.513162 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.22264 -35.25957 -34.12885 -31.07487 -28.62223 -28.14273 -26.05634 -24.29462 -22.14182 -20.43717 -19.12511 -17.05027 -16.20470 -15.35377 -14.51454 -14.38291 -14.21986 -13.92786 -13.15304 -12.78943 -12.59224 -12.12522 -11.43042 -11.24616 -10.99679 -10.85311 -10.77401 -10.73333 -10.64726 -10.31785 -10.07422 -9.90798 -9.65115 -8.88967 -8.80811 -6.85073 -5.70212 -2.98706 3.45777 3.51026 3.53547 4.30086 4.64031 4.85865 4.92714 5.16424 5.55023 5.59612 5.68656 5.74817 5.80128 5.87479 5.92898 6.02811 6.08568 6.18431 6.22945 6.25055 6.33924 6.45783 6.59519 6.63075 6.68998 6.85696 7.73377 7.84893 8.48343 9.59917 10.19413 10.56366 11.52266 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049601 B = 0.009263 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.374741 B = 3022.135770 C = 3160.296527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.106 3.894 4 C 0.134 3.866 5 N -0.724 5.724 6 C -0.239 4.239 7 H 0.068 0.932 8 C -0.014 4.014 9 N -0.929 5.929 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.102 4.102 15 C -0.125 4.125 16 C -0.120 4.120 17 C -0.147 4.147 18 H 0.052 0.948 19 H 0.032 0.968 20 H 0.075 0.925 21 H 0.015 0.985 22 H 0.028 0.972 23 H 0.389 0.611 24 H 0.254 0.746 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 2.707 -12.617 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.066 3.934 4 C 0.005 3.995 5 N -0.369 5.369 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.210 4.210 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.219 1.219 14 C -0.140 4.140 15 C -0.162 4.162 16 C -0.157 4.157 17 C -0.185 4.185 18 H 0.071 0.929 19 H 0.051 0.949 20 H 0.093 0.907 21 H 0.033 0.967 22 H 0.046 0.954 23 H 0.224 0.776 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.674 2.658 -12.486 12.784 hybrid contribution -0.378 0.362 1.003 1.131 sum -1.052 3.020 -11.483 11.920 Atomic orbital electron populations 1.22666 0.82137 1.01456 1.00322 1.87932 1.19096 1.27234 1.94806 1.22418 0.94140 0.83367 0.93432 1.21272 0.96699 0.94747 0.86738 1.42276 1.72979 1.22027 0.99602 1.19275 1.32684 1.01092 0.84010 0.91353 1.24740 1.01705 0.96916 0.97637 1.69694 1.47254 1.14284 1.26573 0.86140 0.77377 0.78263 0.84554 1.20654 1.21926 1.21898 1.22271 0.92291 1.03587 0.95811 1.22538 0.98370 0.98880 0.96432 1.22285 0.95181 0.99213 0.99053 1.22762 0.98065 1.00623 0.97084 0.92918 0.94936 0.90670 0.96729 0.95418 0.77614 0.93628 0.89968 0.90398 0.91592 0.91818 0.92124 0.91701 0.91240 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.11 101.05 1.02 1.54 16 2 O -0.37 -7.21 10.00 -35.23 -0.35 -7.56 16 3 C 0.11 1.92 0.64 -89.49 -0.06 1.86 16 4 C 0.13 2.84 4.33 -4.04 -0.02 2.83 16 5 N -0.72 -19.07 5.25 -59.91 -0.31 -19.39 16 6 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 10 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 C -0.10 -1.78 5.57 -25.03 -0.14 -1.92 16 15 C -0.12 -1.71 6.91 -24.70 -0.17 -1.88 16 16 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 17 C -0.15 -2.13 5.60 -25.61 -0.14 -2.27 16 18 H 0.05 0.99 6.75 -51.93 -0.35 0.64 16 19 H 0.03 0.46 6.56 -51.93 -0.34 0.12 16 20 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.02 0.32 6.69 -51.93 -0.35 -0.03 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.39 10.99 7.25 -40.82 -0.30 10.69 16 24 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.08 1.50 7.85 -51.93 -0.41 1.09 16 26 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.96 6.79 -51.93 -0.35 0.61 16 32 H 0.07 0.93 7.67 -51.93 -0.40 0.54 16 LS Contribution 257.30 15.07 3.88 3.88 Total: -1.00 -31.12 257.30 -6.01 -37.13 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.99 Total: 5.32 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.41 Total: -47.49 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.35 Total: -7.56 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.12 -6.01 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308085824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.433 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds