Wall clock time and date at job start Mon Mar 30 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99745 * 2 1 4 4 C 1.53002 * 110.01824 * 56.57204 * 3 2 1 5 5 N 1.46494 * 109.47112 * 59.94448 * 4 3 2 6 6 C 1.36941 * 119.99710 * 174.87256 * 5 4 3 7 7 H 1.07992 * 120.00065 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99710 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99984 * 359.72703 * 8 6 5 10 10 Si 1.86801 * 119.99755 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47146 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47097 * 120.00253 * 10 8 6 13 13 H 1.48499 * 109.47125 * 240.00116 * 10 8 6 14 14 C 1.54276 * 110.03111 * 177.95916 * 3 2 1 15 15 C 1.54967 * 104.15654 * 95.75141 * 14 3 2 16 16 C 1.54888 * 102.77667 * 37.89121 * 15 14 3 17 17 C 1.53876 * 110.03364 * 295.17554 * 3 2 1 18 18 H 1.09001 * 109.47005 * 294.04903 * 1 2 3 19 19 H 1.08997 * 109.47146 * 54.04715 * 1 2 3 20 20 H 1.08998 * 109.46904 * 174.04931 * 1 2 3 21 21 H 1.09007 * 109.46539 * 299.94261 * 4 3 2 22 22 H 1.09003 * 109.46981 * 179.97438 * 4 3 2 23 23 H 0.96996 * 120.00277 * 354.87080 * 5 4 3 24 24 H 0.97001 * 119.99803 * 180.02562 * 9 8 6 25 25 H 1.08993 * 110.48418 * 214.40152 * 14 3 2 26 26 H 1.08998 * 110.48323 * 337.05007 * 14 3 2 27 27 H 1.08999 * 110.72367 * 279.57518 * 15 14 3 28 28 H 1.09005 * 110.75739 * 156.22278 * 15 14 3 29 29 H 1.09004 * 110.48630 * 203.39783 * 16 15 14 30 30 H 1.08998 * 110.48993 * 80.76009 * 16 15 14 31 31 H 1.08997 * 110.02885 * 359.95273 * 17 3 2 32 32 H 1.08997 * 110.02710 * 121.38316 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4997 2.1061 1.1998 5 7 1.8647 1.4151 2.4389 6 6 1.6046 1.9984 3.6502 7 1 1.1300 2.9676 3.6920 8 6 1.9500 1.3434 4.8244 9 7 2.5226 0.1594 4.7735 10 14 1.5958 2.1394 6.4768 11 1 0.9459 3.4572 6.2622 12 1 0.6908 1.2640 7.2641 13 1 2.8686 2.3295 7.2177 14 6 3.5484 1.1992 0.0516 15 6 3.9854 1.3016 -1.4316 16 6 3.0020 2.3510 -2.0068 17 6 1.6627 2.0372 -1.3083 18 1 -0.3633 0.4188 0.9385 19 1 -0.3633 0.6033 -0.8319 20 1 -0.3633 -1.0221 -0.1065 21 1 0.4151 2.1974 1.1406 22 1 1.9486 3.0993 1.1913 23 1 2.2906 0.5445 2.4013 24 1 2.7637 -0.2984 5.5940 25 1 3.9684 2.0216 0.6306 26 1 3.8505 0.2407 0.4737 27 1 3.8657 0.3428 -1.9361 28 1 5.0142 1.6538 -1.5079 29 1 2.9062 2.2327 -3.0861 30 1 3.3334 3.3597 -1.7606 31 1 1.0515 1.3962 -1.9436 32 1 1.1304 2.9626 -1.0885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308085824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:49 Heat of formation + Delta-G solvation = -67.658808 kcal Electronic energy + Delta-G solvation = -13428.268289 eV Core-core repulsion = 11194.840415 eV Total energy + Delta-G solvation = -2233.427875 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.61498 -36.55246 -36.14531 -33.11101 -29.85396 -29.73734 -27.53113 -26.07107 -23.97387 -21.58427 -20.57849 -19.13477 -17.64380 -16.84554 -16.36657 -15.92977 -15.49320 -15.35138 -15.01155 -14.56633 -14.01986 -13.65639 -13.15895 -12.87862 -12.70027 -12.37228 -12.20690 -12.12257 -11.96486 -11.86639 -11.75868 -11.39364 -11.32288 -10.97791 -10.32004 -9.00642 -7.94781 -5.24321 1.45184 1.46677 1.56749 2.53856 2.93775 3.36952 3.61934 3.71184 3.95075 4.19036 4.35341 4.45113 4.50693 4.55491 4.61214 4.70646 4.76938 4.88183 4.94046 4.98817 5.08345 5.11367 5.16787 5.25686 5.39904 5.46596 5.50713 6.25312 6.45271 7.32569 8.08906 8.34132 9.28716 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049601 B = 0.009263 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.374741 B = 3022.135770 C = 3160.296527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.395 6.395 3 C 0.104 3.896 4 C 0.131 3.869 5 N -0.736 5.736 6 C -0.247 4.247 7 H 0.074 0.926 8 C -0.076 4.076 9 N -0.968 5.968 10 Si 0.976 3.024 11 H -0.266 1.266 12 H -0.293 1.293 13 H -0.292 1.292 14 C -0.107 4.107 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.141 4.141 18 H 0.023 0.977 19 H 0.061 0.939 20 H 0.092 0.908 21 H 0.017 0.983 22 H 0.031 0.969 23 H 0.376 0.624 24 H 0.251 0.749 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 3.880 -14.033 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C 0.065 3.935 4 C 0.004 3.996 5 N -0.378 5.378 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.269 4.269 9 N -0.619 5.619 10 Si 0.805 3.195 11 H -0.190 1.190 12 H -0.220 1.220 13 H -0.219 1.219 14 C -0.145 4.145 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.179 4.179 18 H 0.042 0.958 19 H 0.080 0.920 20 H 0.110 0.890 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.208 0.792 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.095 3.867 -13.935 14.503 hybrid contribution -0.279 -0.003 1.410 1.437 sum -1.374 3.864 -12.526 13.180 Atomic orbital electron populations 1.22760 0.80946 1.02986 0.99936 1.87909 1.20513 1.28080 1.94898 1.22503 0.94166 0.82958 0.93866 1.21476 0.96722 0.95010 0.86373 1.42436 1.72903 1.21724 1.00782 1.19684 1.31755 1.01198 0.85200 0.90788 1.25610 1.02216 0.97639 1.01392 1.69863 1.48883 1.15896 1.27227 0.85041 0.76986 0.77818 0.79698 1.19011 1.22020 1.21880 1.22261 0.92325 1.01421 0.98465 1.22504 0.99755 0.99782 0.93285 1.22297 0.93300 0.99087 1.00365 1.22717 0.99564 1.00581 0.95061 0.95803 0.92010 0.88998 0.96521 0.95117 0.79188 0.94034 0.91486 0.93137 0.91228 0.90065 0.89394 0.90849 0.90026 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 10.11 113.37 1.15 2.11 16 2 O -0.39 -15.17 10.00 -148.98 -1.49 -16.66 16 3 C 0.10 3.70 0.64 -10.06 -0.01 3.69 16 4 C 0.13 5.58 4.33 86.38 0.37 5.95 16 5 N -0.74 -39.56 5.25 -343.45 -1.80 -41.36 16 6 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 7 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 8 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 9 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 10 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 13 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 14 C -0.11 -3.74 5.57 31.70 0.18 -3.56 16 15 C -0.12 -2.92 6.91 31.91 0.22 -2.70 16 16 C -0.11 -2.46 6.83 31.67 0.22 -2.24 16 17 C -0.14 -3.69 5.60 31.32 0.18 -3.51 16 18 H 0.02 0.89 6.75 -2.39 -0.02 0.88 16 19 H 0.06 1.62 6.56 -2.39 -0.02 1.60 16 20 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 21 H 0.02 0.72 6.69 -2.38 -0.02 0.70 16 22 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.38 21.99 7.25 -92.71 -0.67 21.32 16 24 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.07 2.49 7.85 -2.39 -0.02 2.47 16 26 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.95 6.79 -2.39 -0.02 1.94 16 32 H 0.08 1.86 7.67 -2.39 -0.02 1.84 16 Total: -1.00 -67.16 257.30 3.04 -64.12 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.42 Total: 23.48 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 3.61 Total: -17.79 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -1.52 Total: -102.51 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -1.49 Total: -16.66 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -67.16 3.04 -64.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308085824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.539 kcal (2) G-P(sol) polarization free energy of solvation -67.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds