Wall clock time and date at job start Mon Mar 30 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99749 * 2 1 4 4 C 1.53003 * 109.46628 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46745 * 179.97438 * 4 3 2 6 6 H 1.08991 * 110.64245 * 56.69020 * 5 4 3 7 7 C 1.55153 * 110.71711 * 180.02562 * 5 4 3 8 8 C 1.54908 * 101.58115 * 153.86823 * 7 5 4 9 9 N 1.47422 * 104.83166 * 322.98453 * 8 7 5 10 10 C 1.36931 * 125.65110 * 204.09141 * 9 8 7 11 11 H 1.08002 * 120.00239 * 169.98959 * 10 9 8 12 12 C 1.38813 * 119.99970 * 349.99077 * 10 9 8 13 13 N 1.31614 * 119.99973 * 350.41666 * 12 10 9 14 14 Si 1.86803 * 120.00120 * 170.41921 * 12 10 9 15 15 H 1.48506 * 109.47007 * 94.13725 * 14 12 10 16 16 H 1.48493 * 109.47097 * 214.13975 * 14 12 10 17 17 H 1.48501 * 109.47051 * 334.14294 * 14 12 10 18 18 C 1.47024 * 108.70257 * 24.13314 * 9 8 7 19 19 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46853 * 60.00448 * 1 2 3 21 21 H 1.08997 * 109.47258 * 300.00636 * 1 2 3 22 22 H 1.09005 * 109.46852 * 299.99204 * 3 2 1 23 23 H 1.08992 * 109.47577 * 59.99699 * 3 2 1 24 24 H 1.08997 * 109.47089 * 299.99672 * 4 3 2 25 25 H 1.09006 * 109.47269 * 59.99917 * 4 3 2 26 26 H 1.09001 * 111.00506 * 271.94070 * 7 5 4 27 27 H 1.09000 * 111.00939 * 35.79137 * 7 5 4 28 28 H 1.09001 * 110.36528 * 204.15229 * 8 7 5 29 29 H 1.08996 * 110.46245 * 81.87329 * 8 7 5 30 30 H 0.97005 * 120.00050 * 179.97438 * 13 12 10 31 31 H 1.08993 * 109.88313 * 239.52155 * 18 9 8 32 32 H 1.08998 * 109.88593 * 118.35525 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.8020 3.1618 0.8519 7 6 5.7068 2.4936 0.0000 8 6 6.0952 3.8357 -0.6690 9 7 5.0670 4.0535 -1.7028 10 6 5.2169 4.8180 -2.8289 11 1 4.4671 4.7880 -3.6057 12 6 6.3326 5.6314 -2.9722 13 7 7.1479 5.8151 -1.9555 14 14 6.6766 6.4653 -4.6079 15 1 6.0977 7.8329 -4.5978 16 1 8.1437 6.5504 -4.8212 17 1 6.0618 5.6757 -5.7051 18 6 3.8536 3.3149 -1.3238 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 0.5139 0.8899 22 1 1.6886 1.8463 -0.8901 23 1 1.6886 1.8464 0.8899 24 1 3.8567 0.6439 0.8909 25 1 3.8575 0.6435 -0.8891 26 1 6.0949 2.4373 1.0170 27 1 6.0496 1.6469 -0.5947 28 1 7.0821 3.7603 -1.1256 29 1 6.0766 4.6448 0.0611 30 1 7.9278 6.3833 -2.0557 31 1 3.6031 2.5908 -2.0990 32 1 3.0259 4.0097 -1.1813 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308139086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:11 Heat of formation + Delta-G solvation = -35.055616 kcal Electronic energy + Delta-G solvation = -12934.378602 eV Core-core repulsion = 10702.364507 eV Total energy + Delta-G solvation = -2232.014094 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.26466 -37.16416 -33.36629 -31.11737 -29.03816 -27.24610 -25.78316 -24.44616 -22.16083 -20.12401 -19.27159 -16.86496 -16.13874 -15.98577 -15.07628 -14.68379 -14.54007 -13.68850 -13.19397 -12.44073 -12.23373 -11.79863 -11.76862 -11.55403 -11.23272 -10.98643 -10.77792 -10.68025 -10.10087 -9.97144 -9.87818 -9.72555 -9.58371 -9.54730 -8.53351 -6.73991 -5.70284 -3.02203 3.41980 3.47533 3.49996 3.83403 4.53792 5.14690 5.16256 5.30894 5.35177 5.43424 5.51106 5.58357 5.63281 5.68248 5.78059 5.91147 6.11601 6.32207 6.34246 6.45004 6.63920 6.69627 6.80630 7.04474 7.22786 7.57068 7.64495 7.83213 8.31852 9.24664 9.86943 10.55714 11.43050 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059885 B = 0.007385 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.446988 B = 3790.635499 C = 4148.814992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.396 6.396 3 C 0.060 3.940 4 C -0.103 4.103 5 C -0.098 4.098 6 H 0.071 0.929 7 C -0.140 4.140 8 C 0.172 3.828 9 N -0.604 5.604 10 C -0.228 4.228 11 H 0.075 0.925 12 C -0.008 4.008 13 N -0.919 5.919 14 Si 0.910 3.090 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.281 1.281 18 C 0.139 3.861 19 H 0.081 0.919 20 H 0.040 0.960 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.252 0.748 31 H 0.023 0.977 32 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 -8.487 4.707 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.315 6.315 3 C -0.016 4.016 4 C -0.141 4.141 5 C -0.117 4.117 6 H 0.089 0.911 7 C -0.178 4.178 8 C 0.047 3.953 9 N -0.331 5.331 10 C -0.357 4.357 11 H 0.093 0.907 12 C -0.205 4.205 13 N -0.566 5.566 14 Si 0.740 3.260 15 H -0.217 1.217 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.013 3.987 19 H 0.100 0.900 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -8.400 -8.497 4.612 12.807 hybrid contribution -0.083 0.821 -0.795 1.146 sum -8.483 -7.675 3.816 12.059 Atomic orbital electron populations 1.22696 0.81579 1.02289 0.99897 1.87857 1.19308 1.28921 1.95446 1.22675 0.94753 0.83904 1.00305 1.21511 0.92178 0.97575 1.02818 1.22103 0.96676 0.94256 0.98705 0.91083 1.23028 0.93885 1.00958 0.99945 1.21392 0.93842 0.90113 0.89929 1.44505 1.08795 1.56026 1.23747 1.19035 1.05748 1.17072 0.93816 0.90731 1.24815 0.98696 0.99210 0.97765 1.69967 1.16206 1.41677 1.28798 0.86139 0.77319 0.79273 0.83252 1.21658 1.21612 1.20622 1.21375 0.90672 0.93654 0.92974 0.90004 0.94139 0.94327 0.92877 0.93552 0.91571 0.91107 0.92290 0.92099 0.91451 0.95669 0.93770 0.95898 0.96460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.40 -5.62 10.70 -35.23 -0.38 -6.00 16 3 C 0.06 0.84 5.79 37.16 0.21 1.06 16 4 C -0.10 -1.56 4.97 -26.73 -0.13 -1.70 16 5 C -0.10 -1.75 2.98 -88.78 -0.26 -2.02 16 6 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 7 C -0.14 -2.69 6.53 -24.59 -0.16 -2.85 16 8 C 0.17 4.30 5.42 -2.53 -0.01 4.28 16 9 N -0.60 -16.06 3.39 -170.08 -0.58 -16.64 16 10 C -0.23 -6.57 10.24 -15.06 -0.15 -6.72 16 11 H 0.07 2.08 7.85 -52.49 -0.41 1.67 16 12 C -0.01 -0.24 5.40 -17.43 -0.09 -0.34 16 13 N -0.92 -27.59 10.68 55.49 0.59 -27.00 16 14 Si 0.91 22.44 29.56 -169.99 -5.03 17.41 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.14 3.01 5.99 -3.06 -0.02 2.99 16 19 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 20 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.76 7.49 -51.93 -0.39 0.37 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 28 H 0.07 1.85 6.94 -51.93 -0.36 1.49 16 29 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 31 H 0.02 0.49 7.75 -51.93 -0.40 0.09 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -31.19 261.64 -6.29 -37.48 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -5.34 Total: -5.34 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 0.49 Total: -3.86 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.02 Total: -43.64 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.38 Total: -6.00 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.19 -6.29 -37.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308139086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.426 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds