Wall clock time and date at job start Mon Mar 30 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99749 * 2 1 4 4 C 1.53003 * 109.46628 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46745 * 179.97438 * 4 3 2 6 6 H 1.08991 * 110.64245 * 56.69020 * 5 4 3 7 7 C 1.55153 * 110.71711 * 180.02562 * 5 4 3 8 8 C 1.54908 * 101.58115 * 153.86823 * 7 5 4 9 9 N 1.47422 * 104.83166 * 322.98453 * 8 7 5 10 10 C 1.36931 * 125.65110 * 204.09141 * 9 8 7 11 11 H 1.08002 * 120.00239 * 169.98959 * 10 9 8 12 12 C 1.38813 * 119.99970 * 349.99077 * 10 9 8 13 13 N 1.31614 * 119.99973 * 350.41666 * 12 10 9 14 14 Si 1.86803 * 120.00120 * 170.41921 * 12 10 9 15 15 H 1.48506 * 109.47007 * 94.13725 * 14 12 10 16 16 H 1.48493 * 109.47097 * 214.13975 * 14 12 10 17 17 H 1.48501 * 109.47051 * 334.14294 * 14 12 10 18 18 C 1.47024 * 108.70257 * 24.13314 * 9 8 7 19 19 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46853 * 60.00448 * 1 2 3 21 21 H 1.08997 * 109.47258 * 300.00636 * 1 2 3 22 22 H 1.09005 * 109.46852 * 299.99204 * 3 2 1 23 23 H 1.08992 * 109.47577 * 59.99699 * 3 2 1 24 24 H 1.08997 * 109.47089 * 299.99672 * 4 3 2 25 25 H 1.09006 * 109.47269 * 59.99917 * 4 3 2 26 26 H 1.09001 * 111.00506 * 271.94070 * 7 5 4 27 27 H 1.09000 * 111.00939 * 35.79137 * 7 5 4 28 28 H 1.09001 * 110.36528 * 204.15229 * 8 7 5 29 29 H 1.08996 * 110.46245 * 81.87329 * 8 7 5 30 30 H 0.97005 * 120.00050 * 179.97438 * 13 12 10 31 31 H 1.08993 * 109.88313 * 239.52155 * 18 9 8 32 32 H 1.08998 * 109.88593 * 118.35525 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.8020 3.1618 0.8519 7 6 5.7068 2.4936 0.0000 8 6 6.0952 3.8357 -0.6690 9 7 5.0670 4.0535 -1.7028 10 6 5.2169 4.8180 -2.8289 11 1 4.4671 4.7880 -3.6057 12 6 6.3326 5.6314 -2.9722 13 7 7.1479 5.8151 -1.9555 14 14 6.6766 6.4653 -4.6079 15 1 6.0977 7.8329 -4.5978 16 1 8.1437 6.5504 -4.8212 17 1 6.0618 5.6757 -5.7051 18 6 3.8536 3.3149 -1.3238 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 0.5139 0.8899 22 1 1.6886 1.8463 -0.8901 23 1 1.6886 1.8464 0.8899 24 1 3.8567 0.6439 0.8909 25 1 3.8575 0.6435 -0.8891 26 1 6.0949 2.4373 1.0170 27 1 6.0496 1.6469 -0.5947 28 1 7.0821 3.7603 -1.1256 29 1 6.0766 4.6448 0.0611 30 1 7.9278 6.3833 -2.0557 31 1 3.6031 2.5908 -2.0990 32 1 3.0259 4.0097 -1.1813 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308139086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:11 Heat of formation + Delta-G solvation = -55.365993 kcal Electronic energy + Delta-G solvation = -12935.259326 eV Core-core repulsion = 10702.364507 eV Total energy + Delta-G solvation = -2232.894818 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67424 -38.49275 -35.18082 -32.87680 -30.82912 -28.61400 -27.17809 -26.12819 -23.57263 -21.99393 -20.79044 -18.87206 -17.33405 -17.09961 -16.69978 -16.34407 -15.75819 -15.58619 -14.49655 -14.26887 -13.65310 -13.55872 -13.26586 -12.98736 -12.83704 -12.69791 -12.32769 -12.06867 -11.94245 -11.80001 -11.49200 -11.41787 -11.33893 -10.67709 -10.56319 -8.85831 -7.88927 -5.23511 1.45035 1.46973 1.56853 2.49379 2.84288 3.30241 3.73876 3.82541 3.99410 4.20552 4.31183 4.35683 4.55543 4.58555 4.59683 4.68042 4.72643 4.85345 4.88923 5.02870 5.09825 5.17265 5.25933 5.44436 5.50689 5.62519 5.75128 6.20826 6.26813 7.08258 7.76849 8.43964 9.23418 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059885 B = 0.007385 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.446988 B = 3790.635499 C = 4148.814992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.062 3.938 4 C -0.094 4.094 5 C -0.083 4.083 6 H 0.083 0.917 7 C -0.125 4.125 8 C 0.174 3.826 9 N -0.629 5.629 10 C -0.248 4.248 11 H 0.077 0.923 12 C -0.065 4.065 13 N -0.949 5.949 14 Si 0.979 3.021 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.269 1.269 18 C 0.134 3.866 19 H 0.099 0.901 20 H 0.044 0.956 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.031 0.969 29 H -0.003 1.003 30 H 0.249 0.751 31 H 0.026 0.974 32 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 -9.477 4.958 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.014 4.014 4 C -0.131 4.131 5 C -0.102 4.102 6 H 0.102 0.898 7 C -0.163 4.163 8 C 0.049 3.951 9 N -0.355 5.355 10 C -0.377 4.377 11 H 0.095 0.905 12 C -0.258 4.258 13 N -0.598 5.598 14 Si 0.807 3.193 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.194 1.194 18 C 0.009 3.991 19 H 0.118 0.882 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.015 0.985 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.583 -9.510 4.868 14.352 hybrid contribution 0.212 1.115 -0.864 1.426 sum -9.371 -8.395 4.004 13.203 Atomic orbital electron populations 1.22928 0.79673 1.03818 1.00731 1.87813 1.21416 1.28761 1.95600 1.22582 0.93917 0.84210 1.00690 1.21373 0.93049 0.95441 1.03283 1.22007 0.95607 0.95700 0.96889 0.89817 1.22897 0.95061 0.97429 1.00938 1.21228 0.92238 0.92448 0.89146 1.44857 1.10972 1.56111 1.23581 1.19429 1.05975 1.17365 0.94939 0.90503 1.25686 0.98589 1.00261 1.01248 1.70169 1.16494 1.42395 1.30731 0.85069 0.76814 0.78208 0.79247 1.21165 1.21744 1.19388 1.21566 0.88918 0.93467 0.95116 0.88242 0.93754 0.93031 0.93613 0.92107 0.89718 0.92016 0.89374 0.91583 0.95054 0.98461 0.94229 0.95627 0.96493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.74 10.70 -148.98 -1.59 -12.33 16 3 C 0.06 1.59 5.79 71.98 0.42 2.01 16 4 C -0.09 -2.59 4.97 30.60 0.15 -2.43 16 5 C -0.08 -2.79 2.98 -9.60 -0.03 -2.82 16 6 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 7 C -0.12 -4.63 6.53 31.98 0.21 -4.42 16 8 C 0.17 8.86 5.42 86.86 0.47 9.33 16 9 N -0.63 -33.77 3.39 -692.01 -2.35 -36.12 16 10 C -0.25 -14.46 10.24 84.03 0.86 -13.60 16 11 H 0.08 4.31 7.85 -2.91 -0.02 4.28 16 12 C -0.06 -3.78 5.40 84.86 0.46 -3.32 16 13 N -0.95 -58.50 10.68 21.65 0.23 -58.26 16 14 Si 0.98 46.60 29.56 68.60 2.03 48.63 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 C 0.13 5.70 5.99 86.73 0.52 6.22 16 19 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 21 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.05 1.22 7.49 -2.38 -0.02 1.20 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 1.83 8.06 -2.38 -0.02 1.81 16 26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 28 H 0.03 1.78 6.94 -2.39 -0.02 1.76 16 29 H 0.00 -0.15 8.07 -2.39 -0.02 -0.16 16 30 H 0.25 14.78 8.31 -92.70 -0.77 14.00 16 31 H 0.03 1.08 7.75 -2.39 -0.02 1.06 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -67.53 261.64 3.68 -63.84 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.06 Total: 1.58 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 4.31 Total: -7.34 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -2.12 Total: -94.39 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.59 Total: -12.33 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -67.53 3.68 -63.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308139086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.478 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds