Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99656 * 2 1 4 4 C 1.52999 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.74830 * 195.76776 * 4 3 2 6 6 C 1.53516 * 113.47791 * 326.61864 * 4 3 2 7 7 C 1.53520 * 83.57549 * 140.78868 * 6 4 3 8 8 N 1.47479 * 113.47838 * 65.00136 * 4 3 2 9 9 C 1.46898 * 111.00518 * 106.52868 * 8 4 3 10 10 C 1.52992 * 109.47518 * 170.00172 * 9 8 4 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 H 1.09007 * 109.47120 * 299.99788 * 1 2 3 20 20 H 1.08997 * 109.47124 * 59.99862 * 1 2 3 21 21 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47222 * 60.00626 * 3 2 1 23 23 H 1.08998 * 109.47217 * 300.00147 * 3 2 1 24 24 H 1.09001 * 114.17401 * 254.43754 * 6 4 3 25 25 H 1.08997 * 114.16678 * 27.14484 * 6 4 3 26 26 H 1.08998 * 113.47793 * 219.20821 * 7 6 4 27 27 H 1.08998 * 113.47436 * 88.74325 * 7 6 4 28 28 H 1.09004 * 109.46827 * 49.99855 * 9 8 4 29 29 H 1.09005 * 109.47082 * 290.00393 * 9 8 4 30 30 H 1.09004 * 109.47330 * 59.99991 * 10 9 8 31 31 H 1.08997 * 109.47279 * 300.00478 * 10 9 8 32 32 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 4.0320 2.1158 0.2725 6 6 4.0526 -0.0358 0.7737 7 6 5.0642 -0.1216 -0.3779 8 7 4.0755 0.5687 -1.2269 9 6 4.7241 1.5739 -2.0795 10 6 5.4834 0.8727 -3.2075 11 6 6.1483 1.9040 -4.0824 12 1 6.0397 2.9545 -3.8567 13 6 6.8943 1.5063 -5.1717 14 7 7.0302 0.2268 -5.4439 15 14 7.7190 2.7846 -6.2557 16 1 9.0821 3.0671 -5.7385 17 1 7.8138 2.2687 -7.6449 18 1 6.9168 4.0343 -6.2454 19 1 -0.3634 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.6886 1.8464 0.8900 23 1 1.6885 1.8464 -0.8899 24 1 4.4958 0.2038 1.7402 25 1 3.3508 -0.8688 0.8141 26 1 5.2733 -1.1426 -0.6971 27 1 5.9695 0.4604 -0.2048 28 1 5.4216 2.1613 -1.4822 29 1 3.9669 2.2322 -2.5056 30 1 4.7859 0.2853 -3.8047 31 1 6.2405 0.2145 -2.7814 32 1 7.5547 -0.0528 -6.2104 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378847863.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = -18.250773 kcal Electronic energy + Delta-G solvation = -12841.479851 eV Core-core repulsion = 10610.194470 eV Total energy + Delta-G solvation = -2231.285382 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.81147 -37.16023 -33.44207 -31.13435 -28.98112 -27.24271 -26.00855 -23.67668 -22.78410 -20.37153 -19.16855 -16.54387 -16.08265 -15.75340 -15.58993 -14.81248 -14.47086 -14.00153 -13.42159 -12.92643 -12.30321 -12.09541 -11.87669 -11.41405 -11.33214 -11.04676 -10.84358 -10.64964 -10.44086 -10.11646 -9.71944 -9.52322 -9.25950 -9.06558 -8.33598 -8.17496 -5.96904 -3.99762 3.33175 3.39198 3.42573 3.93450 4.41196 4.55259 4.88045 5.13434 5.31113 5.38625 5.38864 5.49669 5.56591 5.69240 5.70941 5.76314 5.97620 6.07268 6.12021 6.28884 6.35444 6.62580 6.87743 7.16117 7.32106 7.60909 7.77388 7.92291 8.11239 8.45534 9.07559 9.63698 11.14495 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057511 B = 0.006831 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.749002 B = 4097.799881 C = 4226.762177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.083 3.917 4 C 0.016 3.984 5 H 0.083 0.917 6 C -0.135 4.135 7 C 0.004 3.996 8 N -0.458 5.458 9 C 0.027 3.973 10 C 0.030 3.970 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 H 0.034 0.966 20 H 0.038 0.962 21 H 0.082 0.918 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.016 0.984 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.916 1.253 12.126 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C 0.006 3.994 4 C -0.094 4.094 5 H 0.101 0.899 6 C -0.173 4.173 7 C -0.125 4.125 8 N -0.181 5.181 9 C -0.101 4.101 10 C -0.007 4.007 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 H 0.052 0.948 20 H 0.057 0.943 21 H 0.100 0.900 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.146 0.614 11.501 14.707 hybrid contribution 0.880 1.554 -0.336 1.817 sum -8.267 2.167 11.165 14.060 Atomic orbital electron populations 1.22684 0.82039 1.02341 0.99424 1.87946 1.18554 1.27589 1.95198 1.22199 0.93262 0.84596 0.99382 1.23490 0.93976 0.97795 0.94122 0.89890 1.23121 0.98839 0.98829 0.96495 1.23587 0.94724 1.01223 0.92953 1.69011 1.21172 1.19412 1.08463 1.22860 0.96725 0.94037 0.96498 1.18996 0.94526 0.95644 0.91565 1.21204 1.31007 0.93024 1.10898 0.92842 1.25008 0.96530 0.95215 0.97595 1.69983 1.40569 1.14322 1.28331 0.86589 0.79794 0.81696 0.79878 1.20696 1.21177 1.19918 0.94756 0.94307 0.89960 0.93629 0.93128 0.91748 0.88076 0.90067 0.91750 0.95579 0.92163 0.95797 0.96595 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.37 -5.60 9.15 -35.23 -0.32 -5.93 16 3 C 0.08 1.17 6.28 37.16 0.23 1.40 16 4 C 0.02 0.25 3.62 -71.42 -0.26 -0.01 16 5 H 0.08 1.21 7.77 -51.93 -0.40 0.80 16 6 C -0.14 -1.97 7.83 -26.19 -0.21 -2.17 16 7 C 0.00 0.07 7.00 -7.53 -0.05 0.02 16 8 N -0.46 -9.04 6.20 -236.46 -1.47 -10.51 16 9 C 0.03 0.59 4.76 -3.83 -0.02 0.57 16 10 C 0.03 0.82 5.08 -27.89 -0.14 0.68 16 11 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 20 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.10 1.52 6.91 -51.93 -0.36 1.17 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 28 H 0.03 0.56 7.56 -51.93 -0.39 0.17 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.45 7.67 -51.93 -0.40 0.05 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 266.58 15.07 4.02 4.02 Total: -1.00 -31.83 266.58 -7.10 -38.93 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -5.30 Total: -4.69 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 0.26 Total: -12.00 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.73 Total: -37.33 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.32 Total: -5.93 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.83 -7.10 -38.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378847863.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.678 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds