Wall clock time and date at job start Mon Mar 30 2020 02:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99656 * 2 1 4 4 C 1.52999 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.74830 * 195.76776 * 4 3 2 6 6 C 1.53516 * 113.47791 * 326.61864 * 4 3 2 7 7 C 1.53520 * 83.57549 * 140.78868 * 6 4 3 8 8 N 1.47479 * 113.47838 * 65.00136 * 4 3 2 9 9 C 1.46898 * 111.00518 * 106.52868 * 8 4 3 10 10 C 1.52992 * 109.47518 * 170.00172 * 9 8 4 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 H 1.09007 * 109.47120 * 299.99788 * 1 2 3 20 20 H 1.08997 * 109.47124 * 59.99862 * 1 2 3 21 21 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47222 * 60.00626 * 3 2 1 23 23 H 1.08998 * 109.47217 * 300.00147 * 3 2 1 24 24 H 1.09001 * 114.17401 * 254.43754 * 6 4 3 25 25 H 1.08997 * 114.16678 * 27.14484 * 6 4 3 26 26 H 1.08998 * 113.47793 * 219.20821 * 7 6 4 27 27 H 1.08998 * 113.47436 * 88.74325 * 7 6 4 28 28 H 1.09004 * 109.46827 * 49.99855 * 9 8 4 29 29 H 1.09005 * 109.47082 * 290.00393 * 9 8 4 30 30 H 1.09004 * 109.47330 * 59.99991 * 10 9 8 31 31 H 1.08997 * 109.47279 * 300.00478 * 10 9 8 32 32 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 4.0320 2.1158 0.2725 6 6 4.0526 -0.0358 0.7737 7 6 5.0642 -0.1216 -0.3779 8 7 4.0755 0.5687 -1.2269 9 6 4.7241 1.5739 -2.0795 10 6 5.4834 0.8727 -3.2075 11 6 6.1483 1.9040 -4.0824 12 1 6.0397 2.9545 -3.8567 13 6 6.8943 1.5063 -5.1717 14 7 7.0302 0.2268 -5.4439 15 14 7.7190 2.7846 -6.2557 16 1 9.0821 3.0671 -5.7385 17 1 7.8138 2.2687 -7.6449 18 1 6.9168 4.0343 -6.2454 19 1 -0.3634 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.6886 1.8464 0.8900 23 1 1.6885 1.8464 -0.8899 24 1 4.4958 0.2038 1.7402 25 1 3.3508 -0.8688 0.8141 26 1 5.2733 -1.1426 -0.6971 27 1 5.9695 0.4604 -0.2048 28 1 5.4216 2.1613 -1.4822 29 1 3.9669 2.2322 -2.5056 30 1 4.7859 0.2853 -3.8047 31 1 6.2405 0.2145 -2.7814 32 1 7.5547 -0.0528 -6.2104 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378847863.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:56 Heat of formation + Delta-G solvation = -41.792609 kcal Electronic energy + Delta-G solvation = -12842.500702 eV Core-core repulsion = 10610.194470 eV Total energy + Delta-G solvation = -2232.306232 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17027 -38.25312 -35.57049 -33.05688 -30.15554 -29.05681 -26.97192 -25.65711 -24.03833 -22.27717 -20.45110 -18.61870 -17.30828 -16.91356 -16.83191 -16.51087 -16.18068 -15.53884 -14.81061 -14.36440 -14.21756 -13.48201 -13.27714 -13.00071 -12.91092 -12.56010 -12.42616 -12.22138 -12.11888 -11.74237 -11.44543 -11.13163 -11.10642 -10.58615 -10.48246 -9.68420 -8.22295 -6.35198 1.38570 1.40991 1.52190 2.38840 2.93525 3.10565 3.15401 3.62368 3.93230 4.23422 4.32139 4.38716 4.48019 4.52230 4.57435 4.61736 4.68851 4.73958 4.83906 4.90409 5.01042 5.02376 5.35399 5.40082 5.51455 5.68898 5.78290 6.13443 6.28560 6.43738 6.81912 7.34466 8.90167 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057511 B = 0.006831 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.749002 B = 4097.799881 C = 4226.762177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.083 3.917 4 C 0.016 3.984 5 H 0.100 0.900 6 C -0.111 4.111 7 C -0.005 4.005 8 N -0.488 5.488 9 C 0.045 3.955 10 C 0.038 3.962 11 C -0.547 4.547 12 H 0.062 0.938 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.971 3.029 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.262 1.262 19 H 0.057 0.943 20 H 0.037 0.963 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.039 0.961 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.058 0.942 30 H -0.015 1.015 31 H -0.010 1.010 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 2.796 13.248 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C 0.006 3.994 4 C -0.094 4.094 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.134 4.134 8 N -0.211 5.211 9 C -0.083 4.083 10 C 0.001 3.999 11 C -0.585 4.585 12 H 0.080 0.920 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.795 3.205 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.186 1.186 19 H 0.075 0.925 20 H 0.055 0.945 21 H 0.110 0.890 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.003 0.997 31 H 0.008 0.992 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.486 2.161 12.643 15.953 hybrid contribution 0.934 1.003 -0.659 1.521 sum -8.552 3.163 11.983 15.058 Atomic orbital electron populations 1.22865 0.80180 1.03435 1.00444 1.87899 1.20686 1.28178 1.95425 1.22238 0.92063 0.84631 1.00462 1.23657 0.95316 0.98728 0.91655 0.88265 1.22994 0.97103 0.98053 0.96723 1.23666 0.95359 1.00131 0.94267 1.68992 1.21853 1.19690 1.10543 1.22503 0.96302 0.94026 0.95506 1.18819 0.93414 0.94989 0.92692 1.21633 1.31471 0.93715 1.11676 0.91978 1.26045 0.97058 0.97579 0.99194 1.70132 1.41359 1.16766 1.29108 0.85359 0.78857 0.78801 0.77477 1.19504 1.20665 1.18594 0.92467 0.94469 0.88967 0.90224 0.94251 0.88420 0.88537 0.91694 0.91684 0.94679 0.92341 0.99682 0.99172 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.40 -11.38 9.15 -148.98 -1.36 -12.75 16 3 C 0.08 2.15 6.28 71.98 0.45 2.60 16 4 C 0.02 0.46 3.62 42.20 0.15 0.61 16 5 H 0.10 2.60 7.77 -2.38 -0.02 2.58 16 6 C -0.11 -3.00 7.83 30.94 0.24 -2.76 16 7 C -0.01 -0.18 7.00 83.59 0.59 0.40 16 8 N -0.49 -19.28 6.20 -902.03 -5.60 -24.88 16 9 C 0.04 2.01 4.76 86.30 0.41 2.42 16 10 C 0.04 2.17 5.08 29.85 0.15 2.32 16 11 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 12 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 13 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 14 N -0.93 -58.90 13.29 21.45 0.28 -58.62 16 15 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 19 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 20 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.10 2.73 6.91 -2.39 -0.02 2.72 16 26 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.06 2.25 7.70 -2.39 -0.02 2.23 16 28 H 0.04 1.49 7.56 -2.38 -0.02 1.47 16 29 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 30 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 31 H -0.01 -0.61 7.67 -2.39 -0.02 -0.63 16 32 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -69.54 266.58 0.35 -69.19 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.06 Total: 4.21 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.94 Total: -24.30 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -5.31 Total: -83.50 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.36 Total: -12.75 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.54 0.35 -69.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378847863.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.397 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds