Wall clock time and date at job start Mon Mar 30 2020 02:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 110.99757 * 2 1 4 4 C 1.50696 * 109.47177 * 66.04606 * 3 2 1 5 5 H 1.07997 * 119.99720 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00326 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99815 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46818 * 90.00521 * 8 6 4 10 10 H 1.48502 * 109.47167 * 210.00042 * 8 6 4 11 11 H 1.48492 * 109.47581 * 330.00402 * 8 6 4 12 12 C 1.46902 * 110.99968 * 236.05043 * 2 1 3 13 13 C 1.53001 * 109.46901 * 293.94654 * 12 2 1 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 2 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 H 1.09004 * 115.71715 * 29.41667 * 15 14 13 17 17 C 1.53001 * 117.77515 * 176.36449 * 15 14 13 18 18 O 1.42898 * 117.77544 * 242.47621 * 15 14 13 19 19 H 1.09000 * 109.47302 * 183.95107 * 1 2 3 20 20 H 1.09001 * 109.47433 * 303.95319 * 1 2 3 21 21 H 1.09007 * 109.47275 * 63.95205 * 1 2 3 22 22 H 1.08998 * 109.47246 * 186.04864 * 3 2 1 23 23 H 1.08999 * 109.47506 * 306.04792 * 3 2 1 24 24 H 0.96999 * 120.00091 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46712 * 173.95056 * 12 2 1 26 26 H 1.09002 * 109.47411 * 53.95168 * 12 2 1 27 27 H 1.09001 * 109.46652 * 60.00371 * 13 12 2 28 28 H 1.08992 * 109.47514 * 300.00460 * 13 12 2 29 29 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 30 30 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 31 31 H 1.09000 * 117.77466 * 213.67936 * 17 15 14 32 32 H 1.08997 * 117.76943 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5112 2.0487 6 6 2.0266 3.3495 1.5285 7 7 1.7141 3.9391 2.6618 8 14 2.9997 4.2762 0.2309 9 1 2.0630 4.9799 -0.6817 10 1 3.8860 5.2680 0.8913 11 1 3.8237 3.3177 -0.5485 12 6 1.9954 -0.7659 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 6 2.1804 -3.0404 -2.1549 15 6 1.8160 -4.5169 -1.9880 16 1 0.8944 -4.7178 -1.4416 17 6 2.2007 -5.4780 -3.1146 18 8 2.8851 -5.4561 -1.8583 19 1 -0.3634 -1.0252 0.0708 20 1 -0.3634 0.5740 0.8524 21 1 -0.3634 0.4513 -0.9233 22 1 3.0796 1.3445 -0.1083 23 1 1.5610 1.9274 -0.8309 24 1 1.9887 4.8552 2.8238 25 1 3.0797 -0.6609 -1.1757 26 1 1.5610 -0.3872 -2.0629 27 1 0.5472 -2.3475 -0.9323 28 1 2.0658 -2.6213 -0.0452 29 1 1.7464 -2.6617 -3.0804 30 1 3.2647 -2.9354 -2.1925 31 1 1.5352 -6.3175 -3.3156 32 1 2.7154 -5.0641 -3.9817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379323212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:02 Heat of formation + Delta-G solvation = -12.986561 kcal Electronic energy + Delta-G solvation = -12479.433750 eV Core-core repulsion = 10248.376642 eV Total energy + Delta-G solvation = -2231.057108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.38386 -37.11630 -33.60684 -32.19547 -28.48747 -27.29709 -25.88727 -24.27397 -21.75224 -20.94384 -19.96547 -16.82822 -16.64814 -15.71584 -15.39590 -14.67967 -14.58932 -14.16825 -13.63771 -13.10595 -12.40892 -12.30742 -12.05708 -11.62277 -11.47829 -11.18811 -10.97497 -10.70317 -10.55769 -10.45141 -10.28880 -9.96025 -9.75918 -9.26087 -8.56756 -7.36508 -6.04164 -4.01336 3.28578 3.33032 3.36364 3.38622 4.02281 4.42872 4.48844 4.72724 4.89886 4.95947 5.24384 5.27541 5.34459 5.41650 5.61930 5.71861 5.86504 5.89624 6.04326 6.13765 6.24482 6.42542 6.50072 6.72450 6.86546 7.01302 7.61833 7.92317 8.07846 8.67694 9.04441 9.57671 11.09051 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069836 B = 0.005919 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.841539 B = 4729.004376 C = 4910.141891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.533 5.533 3 C 0.161 3.839 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.053 3.947 13 C -0.113 4.113 14 C -0.108 4.108 15 C -0.002 4.002 16 H 0.125 0.875 17 C -0.046 4.046 18 O -0.360 6.360 19 H 0.049 0.951 20 H 0.079 0.921 21 H 0.010 0.990 22 H 0.028 0.972 23 H -0.017 1.017 24 H 0.263 0.737 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 -13.353 -12.237 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.257 5.257 3 C 0.035 3.965 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.076 4.076 13 C -0.151 4.151 14 C -0.146 4.146 15 C -0.059 4.059 16 H 0.142 0.858 17 C -0.122 4.122 18 O -0.280 6.280 19 H 0.068 0.932 20 H 0.097 0.903 21 H 0.029 0.971 22 H 0.046 0.954 23 H 0.001 0.999 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.822 -13.532 -11.487 17.769 hybrid contribution 0.357 0.949 -1.311 1.658 sum -0.465 -12.583 -12.798 17.954 Atomic orbital electron populations 1.22288 0.88421 0.99951 1.00733 1.61932 1.07370 1.16363 1.40012 1.20196 0.95185 0.84178 0.96973 1.21055 1.35536 0.97190 1.00963 0.90121 1.24905 0.95768 0.97364 0.95341 1.69895 1.46966 1.13247 1.23907 0.86852 0.80638 0.80022 0.82158 1.20367 1.21124 1.19228 1.22088 0.99991 0.93090 0.92422 1.21577 1.00940 0.94783 0.97768 1.21529 1.02357 0.90805 0.99932 1.23899 0.92601 0.89265 1.00102 0.85792 1.24364 1.00110 1.01801 0.85927 1.91713 1.48483 1.56738 1.31047 0.93180 0.90257 0.97147 0.95441 0.99926 0.92673 0.91505 0.95983 0.91715 0.90905 0.90298 0.90752 0.87454 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.14 60.06 0.55 1.21 16 2 N -0.53 -11.34 4.75 -244.37 -1.16 -12.50 16 3 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 4 C -0.51 -14.69 9.01 -34.44 -0.31 -15.00 16 5 H 0.08 2.52 7.37 -52.49 -0.39 2.14 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 8 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 12 C 0.05 0.89 4.96 -3.82 -0.02 0.87 16 13 C -0.11 -1.53 5.10 -26.73 -0.14 -1.67 16 14 C -0.11 -1.19 5.63 -26.73 -0.15 -1.34 16 15 C 0.00 -0.02 6.60 -26.73 -0.18 -0.19 16 16 H 0.12 1.12 8.08 -51.93 -0.42 0.70 16 17 C -0.05 -0.40 11.42 37.16 0.42 0.02 16 18 O -0.36 -4.85 14.48 -35.23 -0.51 -5.36 16 19 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 20 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 21 H 0.01 0.19 8.14 -51.92 -0.42 -0.24 16 22 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 23 H -0.02 -0.42 7.55 -51.93 -0.39 -0.81 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.07 1.14 7.93 -51.93 -0.41 0.72 16 26 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 27 H 0.06 0.82 6.55 -51.93 -0.34 0.48 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 265.51 15.07 4.00 4.00 Total: -1.00 -32.06 265.51 -6.63 -38.69 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -5.12 Total: -4.56 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 0.06 Total: -10.25 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.39 Total: -39.55 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.51 Total: -5.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.06 -6.63 -38.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379323212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.699 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds