Wall clock time and date at job start Mon Mar 30 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46984 * 2 1 4 4 C 1.46902 * 111.00420 * 158.81337 * 3 2 1 5 5 C 1.50705 * 109.46907 * 288.66119 * 4 3 2 6 6 H 1.07994 * 120.00117 * 359.95967 * 5 4 3 7 7 C 1.37880 * 119.99776 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99777 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00150 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46845 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47616 * 119.99690 * 9 7 5 12 12 H 1.48504 * 109.47025 * 240.00326 * 9 7 5 13 13 C 1.46899 * 111.00024 * 282.77109 * 3 2 1 14 14 H 1.09005 * 115.56017 * 213.78457 * 13 3 2 15 15 C 1.52994 * 117.49945 * 359.47456 * 13 3 2 16 16 C 1.53003 * 117.50142 * 68.10022 * 13 3 2 17 17 H 1.09005 * 117.49571 * 359.97438 * 16 13 3 18 18 C 1.53001 * 117.52071 * 145.02992 * 16 13 3 19 19 O 1.42903 * 109.46771 * 184.88113 * 18 16 13 20 20 H 1.09000 * 109.47150 * 65.92899 * 1 2 3 21 21 H 1.09000 * 109.46416 * 185.92688 * 1 2 3 22 22 H 1.09001 * 109.46872 * 305.92551 * 1 2 3 23 23 H 1.08996 * 109.47490 * 240.00592 * 2 1 3 24 24 H 1.08999 * 109.47695 * 119.99856 * 2 1 3 25 25 H 1.08996 * 109.46664 * 48.66021 * 4 3 2 26 26 H 1.08998 * 109.47306 * 168.66516 * 4 3 2 27 27 H 0.97003 * 120.00054 * 179.97438 * 8 7 5 28 28 H 1.08998 * 117.49987 * 0.02562 * 15 13 3 29 29 H 1.09007 * 117.51989 * 214.97101 * 15 13 3 30 30 H 1.08997 * 109.46679 * 304.88129 * 18 16 13 31 31 H 1.08996 * 109.46931 * 64.87938 * 18 16 13 32 32 H 0.96708 * 113.99070 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4008 1.4552 0.4956 5 6 3.4161 1.1906 1.9792 6 1 2.4923 0.9910 2.5017 7 6 4.6096 1.2037 2.6695 8 7 5.7346 1.4467 2.0331 9 14 4.6288 0.8750 4.5082 10 1 3.2426 0.6309 4.9818 11 1 5.4657 -0.3190 4.7890 12 1 5.1929 2.0525 5.2157 13 6 1.9093 1.9824 -1.3375 14 1 2.6921 2.6937 -1.6009 15 6 1.3441 1.1070 -2.4577 16 6 0.5031 2.2469 -1.8793 17 1 -0.3402 1.9772 -1.2435 18 6 0.3029 3.4891 -2.7497 19 8 -1.0836 3.6312 -3.0653 20 1 -0.3633 0.4192 -0.9383 21 1 -0.3632 -1.0222 0.1061 22 1 -0.3633 0.6030 0.8322 23 1 1.8934 -0.5137 -0.8900 24 1 1.8935 -0.5138 0.8900 25 1 4.0078 0.7066 -0.0133 26 1 3.8072 2.4474 0.2994 27 1 6.5742 1.4563 2.5188 28 1 1.0537 0.0880 -2.2022 29 1 1.7547 1.2422 -3.4584 30 1 0.6445 4.3711 -2.2080 31 1 0.8762 3.3837 -3.6707 32 1 -1.2848 4.4003 -3.6159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379339069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:09 Heat of formation + Delta-G solvation = -38.932056 kcal Electronic energy + Delta-G solvation = -12987.023262 eV Core-core repulsion = 10754.841073 eV Total energy + Delta-G solvation = -2232.182189 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.35205 -37.60208 -35.62446 -34.15864 -31.76790 -28.59143 -27.25567 -24.30648 -23.87206 -21.52266 -20.87244 -18.68102 -18.11599 -17.45751 -16.64753 -15.88287 -15.53685 -14.93044 -14.86404 -14.25976 -14.14945 -13.81178 -13.21494 -12.97206 -12.66528 -12.43832 -12.30352 -12.24266 -11.97390 -11.74917 -11.54613 -11.25809 -11.13892 -10.62731 -10.53062 -8.83659 -8.21407 -6.31797 1.40249 1.40909 1.54790 2.38919 2.72509 3.10100 3.17025 3.59938 3.88255 4.02465 4.20181 4.36759 4.38523 4.48096 4.54684 4.71661 4.79900 4.81835 4.94545 4.98029 5.11474 5.15572 5.27674 5.37550 5.48585 5.66043 6.06086 6.36314 6.64374 6.84612 6.96048 7.37936 8.89384 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051384 B = 0.007850 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.782166 B = 3566.061348 C = 3733.452126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.515 5.515 4 C 0.210 3.790 5 C -0.523 4.523 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.013 3.987 14 H 0.102 0.898 15 C -0.201 4.201 16 C -0.148 4.148 17 H 0.109 0.891 18 C 0.112 3.888 19 O -0.589 6.589 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.039 0.961 24 H 0.056 0.944 25 H -0.034 1.034 26 H 0.005 0.995 27 H 0.265 0.735 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 1.203 -8.789 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.238 5.238 4 C 0.084 3.916 5 C -0.562 4.562 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.203 1.203 13 C -0.097 4.097 14 H 0.120 0.880 15 C -0.239 4.239 16 C -0.167 4.167 17 H 0.127 0.873 18 C 0.035 3.965 19 O -0.397 6.397 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.075 0.925 25 H -0.016 1.016 26 H 0.023 0.977 27 H 0.074 0.926 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.865 0.949 -8.058 12.773 hybrid contribution 1.133 0.001 0.099 1.138 sum -8.732 0.950 -7.959 11.853 Atomic orbital electron populations 1.22084 0.93849 1.02021 1.02548 1.22157 0.96635 0.88842 1.00178 1.61871 1.23137 1.18526 1.20217 1.19399 0.83448 0.94147 0.94569 1.21484 0.93230 1.47546 0.93891 0.92224 1.25905 0.94959 0.95001 1.03724 1.70087 0.98684 1.50704 1.38008 0.85323 0.78394 0.77887 0.78943 1.18945 1.20221 1.20282 1.22801 0.96512 1.02076 0.88281 0.87992 1.23819 1.04435 0.97049 0.98630 1.22642 0.95103 0.97146 1.01793 0.87272 1.21619 0.82291 0.95482 0.97136 1.86423 1.25214 1.53160 1.74940 0.90973 0.91023 0.93257 0.94305 0.92546 1.01629 0.97731 0.92614 0.87638 0.87350 0.92968 0.91889 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 8.88 71.98 0.64 -4.09 16 2 C 0.05 1.96 5.10 86.30 0.44 2.40 16 3 N -0.52 -23.11 4.60 -875.52 -4.02 -27.14 16 4 C 0.21 11.49 4.69 85.56 0.40 11.89 16 5 C -0.52 -30.36 8.31 25.60 0.21 -30.14 16 6 H 0.06 3.44 7.68 -2.91 -0.02 3.42 16 7 C 0.00 0.12 5.46 84.66 0.46 0.58 16 8 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 9 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 13 C 0.01 0.49 5.81 44.91 0.26 0.75 16 14 H 0.10 3.82 7.79 -2.38 -0.02 3.80 16 15 C -0.20 -5.94 8.63 30.59 0.26 -5.67 16 16 C -0.15 -4.51 5.13 -10.79 -0.06 -4.57 16 17 H 0.11 3.61 5.66 -2.38 -0.01 3.60 16 18 C 0.11 2.73 7.33 71.98 0.53 3.26 16 19 O -0.59 -13.58 13.66 -148.98 -2.04 -15.61 16 20 H 0.07 2.15 4.04 -2.39 -0.01 2.14 16 21 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.04 1.45 6.05 -2.39 -0.01 1.44 16 24 H 0.06 2.51 6.99 -2.39 -0.02 2.49 16 25 H -0.03 -2.00 8.06 -2.39 -0.02 -2.02 16 26 H 0.00 0.27 7.81 -2.39 -0.02 0.25 16 27 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.11 3.11 4.87 -2.39 -0.01 3.10 16 29 H 0.11 2.72 8.03 -2.38 -0.02 2.71 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.29 7.88 -2.39 -0.02 1.27 16 32 H 0.40 4.86 9.12 -74.05 -0.68 4.18 16 Total: -1.00 -66.86 258.47 -0.16 -67.02 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.43 Total: 10.82 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 3.15 Total: -25.59 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -3.74 Total: -83.53 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -2.04 Total: -15.61 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.86 -0.16 -67.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379339069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.089 kcal (2) G-P(sol) polarization free energy of solvation -66.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds