Wall clock time and date at job start Mon Mar 30 2020 02:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46898 * 109.46801 * 2 1 4 4 C 1.46900 * 111.00174 * 75.79887 * 3 2 1 5 5 C 1.50698 * 109.46942 * 199.35160 * 4 3 2 6 6 H 1.07994 * 120.00706 * 355.11766 * 5 4 3 7 7 C 1.37880 * 119.99609 * 175.11892 * 5 4 3 8 8 N 1.31523 * 120.00252 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47025 * 89.99877 * 9 7 5 11 11 H 1.48503 * 109.47076 * 330.00217 * 9 7 5 12 12 H 1.48495 * 109.47715 * 210.00083 * 9 7 5 13 13 C 1.46904 * 110.99371 * 199.75109 * 3 2 1 14 14 H 1.09007 * 115.55009 * 270.45999 * 13 3 2 15 15 C 1.52997 * 117.49838 * 124.79720 * 13 3 2 16 16 C 1.52988 * 117.50125 * 56.13669 * 13 3 2 17 17 H 1.09002 * 117.50119 * 359.97438 * 16 13 3 18 18 C 1.52998 * 117.50122 * 214.97586 * 16 13 3 19 19 O 1.42896 * 109.47666 * 174.99803 * 18 16 13 20 20 H 1.08999 * 109.47195 * 294.83935 * 1 2 3 21 21 H 1.08995 * 109.46998 * 54.83772 * 1 2 3 22 22 H 1.08994 * 109.47053 * 174.84190 * 1 2 3 23 23 H 1.09003 * 109.46775 * 239.99675 * 2 1 3 24 24 H 1.08996 * 109.46911 * 119.99885 * 2 1 3 25 25 H 1.09003 * 109.47142 * 79.34859 * 4 3 2 26 26 H 1.09003 * 109.47209 * 319.35367 * 4 3 2 27 27 H 0.96999 * 119.99654 * 359.97438 * 8 7 5 28 28 H 1.09003 * 117.49876 * 359.97438 * 15 13 3 29 29 H 1.08993 * 117.50199 * 144.99323 * 15 13 3 30 30 H 1.08994 * 109.47376 * 295.00099 * 18 16 13 31 31 H 1.09006 * 109.47190 * 54.99991 * 18 16 13 32 32 H 0.96697 * 114.00258 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8779 1.9935 1.3295 5 6 1.9274 3.4943 1.2028 6 1 2.1303 3.9491 0.2445 7 6 1.7135 4.2870 2.3105 8 7 1.4669 3.7333 3.4778 9 14 1.7755 6.1474 2.1538 10 1 0.4204 6.6624 1.8317 11 1 2.7180 6.5216 1.0689 12 1 2.2373 6.7372 3.4360 13 6 3.4121 1.4510 -0.4635 14 1 4.1712 1.3535 0.3128 15 6 3.7214 2.3770 -1.6415 16 6 3.7278 0.8591 -1.8384 17 1 2.9025 0.4202 -2.3991 18 6 5.0849 0.1760 -2.0189 19 8 5.1530 -0.4125 -3.3193 20 1 -0.3633 0.4317 0.9326 21 1 -0.3633 0.5918 -0.8401 22 1 -0.3633 -1.0234 -0.0924 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.6912 1.6561 1.9721 26 1 0.9238 1.6968 1.7650 27 1 1.4351 2.7673 3.5592 28 1 2.8916 2.9370 -2.0729 29 1 4.6838 2.8887 -1.6403 30 1 5.8801 0.9137 -1.9120 31 1 5.2048 -0.5996 -1.2624 32 1 5.9878 -0.8645 -3.5033 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379339070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:11 Heat of formation + Delta-G solvation = -30.479500 kcal Electronic energy + Delta-G solvation = -12986.916572 eV Core-core repulsion = 10755.100913 eV Total energy + Delta-G solvation = -2231.815659 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.43946 -36.49711 -34.32835 -32.72283 -29.61086 -26.62052 -25.80985 -22.69943 -21.56640 -20.55025 -19.49134 -17.35112 -16.88703 -15.40161 -14.67675 -14.58124 -13.97781 -13.73356 -13.64320 -12.90392 -12.29057 -11.91321 -11.69393 -11.52895 -11.08993 -10.91434 -10.75135 -10.64119 -10.38656 -10.13391 -10.04151 -9.66515 -9.28974 -8.66244 -8.31607 -7.33472 -6.32044 -3.99714 3.46834 3.50164 3.66184 3.99341 4.32618 4.55955 4.78379 5.23968 5.38130 5.45015 5.47927 5.51659 5.61771 5.74519 5.87585 5.90800 6.10002 6.22983 6.26750 6.46224 6.51543 6.66321 6.75541 6.97876 7.06126 7.62120 7.84357 8.06551 8.33454 8.66146 8.92365 9.70091 11.06822 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035010 B = 0.009491 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.590578 B = 2949.411941 C = 3496.915269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 N -0.504 5.504 4 C 0.184 3.816 5 C -0.579 4.579 6 H 0.058 0.942 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 1.074 2.926 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.286 1.286 13 C 0.051 3.949 14 H 0.080 0.920 15 C -0.148 4.148 16 C -0.168 4.168 17 H 0.110 0.890 18 C 0.109 3.891 19 O -0.573 6.573 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.022 0.978 25 H -0.021 1.021 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -6.917 -8.747 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.228 5.228 4 C 0.059 3.941 5 C -0.617 4.617 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.556 5.556 9 Si 0.903 3.097 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.212 1.212 13 C -0.059 4.059 14 H 0.097 0.903 15 C -0.186 4.186 16 C -0.186 4.186 17 H 0.128 0.872 18 C 0.031 3.969 19 O -0.378 6.378 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.040 0.960 25 H -0.003 1.003 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.346 -4.981 -8.240 10.564 hybrid contribution 1.192 -2.117 -0.142 2.434 sum 5.538 -7.098 -8.382 12.301 Atomic orbital electron populations 1.21730 0.95455 1.00051 1.02720 1.22033 0.95896 0.90533 0.99403 1.61956 1.15700 1.14893 1.30266 1.19918 0.95131 0.95823 0.83239 1.22008 1.51686 0.90493 0.97555 0.92323 1.25836 0.94101 1.06819 0.92406 1.70778 1.46614 1.13167 1.25034 0.83466 0.76590 0.74303 0.75368 1.21495 1.21465 1.21192 1.22305 0.91556 1.02660 0.89365 0.90250 1.23134 1.02324 0.91078 1.02021 1.22395 0.97576 0.96998 1.01680 0.87170 1.21716 0.96011 0.95441 0.83703 1.86494 1.41789 1.75158 1.34311 0.92576 0.92168 0.93420 0.91948 0.95996 1.00307 0.95708 0.92450 0.88220 0.89423 0.93540 0.93759 0.77905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.96 37.16 0.37 -2.11 16 2 C 0.05 0.93 5.64 -3.82 -0.02 0.91 16 3 N -0.50 -11.15 4.50 -228.08 -1.03 -12.18 16 4 C 0.18 4.83 3.92 -4.98 -0.02 4.81 16 5 C -0.58 -16.62 8.99 -34.44 -0.31 -16.93 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.01 0.32 5.46 -17.81 -0.10 0.23 16 8 N -0.92 -28.29 13.65 55.43 0.76 -27.53 16 9 Si 1.07 25.78 29.90 -169.99 -5.08 20.69 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.05 1.00 4.65 -67.72 -0.31 0.69 16 14 H 0.08 1.62 7.90 -51.92 -0.41 1.21 16 15 C -0.15 -2.67 10.11 -26.70 -0.27 -2.94 16 16 C -0.17 -2.78 5.04 -90.59 -0.46 -3.23 16 17 H 0.11 1.92 7.35 -51.93 -0.38 1.54 16 18 C 0.11 1.47 7.33 37.16 0.27 1.74 16 19 O -0.57 -7.37 13.66 -35.23 -0.48 -7.85 16 20 H 0.06 1.07 6.90 -51.93 -0.36 0.71 16 21 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.06 6.38 -51.93 -0.33 0.73 16 24 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 25 H -0.02 -0.57 7.83 -51.93 -0.41 -0.98 16 26 H 0.03 0.68 6.24 -51.93 -0.32 0.36 16 27 H 0.27 8.14 7.19 -40.82 -0.29 7.85 16 28 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 29 H 0.09 1.43 8.03 -51.93 -0.42 1.02 16 30 H 0.05 0.58 7.88 -51.93 -0.41 0.17 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.37 2.81 9.12 45.56 0.42 3.23 16 LS Contribution 267.32 15.07 4.03 4.03 Total: -1.00 -32.06 267.32 -6.88 -38.94 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.23 Total: 0.75 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.85 Total: -16.84 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: -0.27 Total: -39.71 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.48 Total: -7.85 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.06 -6.88 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379339070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.459 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds