Wall clock time and date at job start Mon Mar 30 2020 02:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46898 * 109.46801 * 2 1 4 4 C 1.46900 * 111.00174 * 75.79887 * 3 2 1 5 5 C 1.50698 * 109.46942 * 199.35160 * 4 3 2 6 6 H 1.07994 * 120.00706 * 355.11766 * 5 4 3 7 7 C 1.37880 * 119.99609 * 175.11892 * 5 4 3 8 8 N 1.31523 * 120.00252 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47025 * 89.99877 * 9 7 5 11 11 H 1.48503 * 109.47076 * 330.00217 * 9 7 5 12 12 H 1.48495 * 109.47715 * 210.00083 * 9 7 5 13 13 C 1.46904 * 110.99371 * 199.75109 * 3 2 1 14 14 H 1.09007 * 115.55009 * 270.45999 * 13 3 2 15 15 C 1.52997 * 117.49838 * 124.79720 * 13 3 2 16 16 C 1.52988 * 117.50125 * 56.13669 * 13 3 2 17 17 H 1.09002 * 117.50119 * 359.97438 * 16 13 3 18 18 C 1.52998 * 117.50122 * 214.97586 * 16 13 3 19 19 O 1.42896 * 109.47666 * 174.99803 * 18 16 13 20 20 H 1.08999 * 109.47195 * 294.83935 * 1 2 3 21 21 H 1.08995 * 109.46998 * 54.83772 * 1 2 3 22 22 H 1.08994 * 109.47053 * 174.84190 * 1 2 3 23 23 H 1.09003 * 109.46775 * 239.99675 * 2 1 3 24 24 H 1.08996 * 109.46911 * 119.99885 * 2 1 3 25 25 H 1.09003 * 109.47142 * 79.34859 * 4 3 2 26 26 H 1.09003 * 109.47209 * 319.35367 * 4 3 2 27 27 H 0.96999 * 119.99654 * 359.97438 * 8 7 5 28 28 H 1.09003 * 117.49876 * 359.97438 * 15 13 3 29 29 H 1.08993 * 117.50199 * 144.99323 * 15 13 3 30 30 H 1.08994 * 109.47376 * 295.00099 * 18 16 13 31 31 H 1.09006 * 109.47190 * 54.99991 * 18 16 13 32 32 H 0.96697 * 114.00258 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8779 1.9935 1.3295 5 6 1.9274 3.4943 1.2028 6 1 2.1303 3.9491 0.2445 7 6 1.7135 4.2870 2.3105 8 7 1.4669 3.7333 3.4778 9 14 1.7755 6.1474 2.1538 10 1 0.4204 6.6624 1.8317 11 1 2.7180 6.5216 1.0689 12 1 2.2373 6.7372 3.4360 13 6 3.4121 1.4510 -0.4635 14 1 4.1712 1.3535 0.3128 15 6 3.7214 2.3770 -1.6415 16 6 3.7278 0.8591 -1.8384 17 1 2.9025 0.4202 -2.3991 18 6 5.0849 0.1760 -2.0189 19 8 5.1530 -0.4125 -3.3193 20 1 -0.3633 0.4317 0.9326 21 1 -0.3633 0.5918 -0.8401 22 1 -0.3633 -1.0234 -0.0924 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.6912 1.6561 1.9721 26 1 0.9238 1.6968 1.7650 27 1 1.4351 2.7673 3.5592 28 1 2.8916 2.9370 -2.0729 29 1 4.6838 2.8887 -1.6403 30 1 5.8801 0.9137 -1.9120 31 1 5.2048 -0.5996 -1.2624 32 1 5.9878 -0.8645 -3.5033 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379339070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:11 Heat of formation + Delta-G solvation = -54.560730 kcal Electronic energy + Delta-G solvation = -12987.960813 eV Core-core repulsion = 10755.100913 eV Total energy + Delta-G solvation = -2232.859899 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.92364 -37.70609 -35.90280 -34.75192 -31.28779 -28.20564 -27.41159 -24.76716 -23.09658 -21.99899 -21.01191 -19.10577 -18.28248 -16.94078 -16.31520 -15.71787 -15.66650 -15.55869 -15.32887 -14.22417 -13.92613 -13.62895 -13.49428 -13.26078 -12.71132 -12.61886 -12.50154 -12.06451 -11.92592 -11.72330 -11.55140 -11.12644 -10.78779 -10.61775 -10.51325 -9.12408 -8.64766 -6.34642 1.53079 1.62211 1.80354 2.56167 2.67531 2.92142 3.17607 3.46002 3.92168 4.05564 4.14533 4.26433 4.29788 4.37134 4.49040 4.59825 4.67297 4.74039 4.76727 4.88560 4.97055 5.06211 5.10152 5.26898 5.29935 5.84168 6.05140 6.41940 6.44347 6.65804 6.91219 7.44633 8.73263 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035010 B = 0.009491 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.590578 B = 2949.411941 C = 3496.915269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.047 3.953 3 N -0.514 5.514 4 C 0.197 3.803 5 C -0.588 4.588 6 H 0.054 0.946 7 C -0.040 4.040 8 N -0.942 5.942 9 Si 1.122 2.878 10 H -0.274 1.274 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.021 3.979 14 H 0.070 0.930 15 C -0.152 4.152 16 C -0.136 4.136 17 H 0.105 0.895 18 C 0.114 3.886 19 O -0.587 6.587 20 H 0.030 0.970 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.018 0.982 25 H -0.044 1.044 26 H 0.005 0.995 27 H 0.252 0.748 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -7.033 -10.321 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.080 4.080 3 N -0.238 5.238 4 C 0.071 3.929 5 C -0.626 4.626 6 H 0.072 0.928 7 C -0.236 4.236 8 N -0.580 5.580 9 Si 0.943 3.057 10 H -0.200 1.200 11 H -0.194 1.194 12 H -0.209 1.209 13 C -0.088 4.088 14 H 0.088 0.912 15 C -0.190 4.190 16 C -0.155 4.155 17 H 0.123 0.877 18 C 0.036 3.964 19 O -0.396 6.396 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.036 0.964 25 H -0.027 1.027 26 H 0.023 0.977 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.177 -5.138 -9.845 12.252 hybrid contribution 0.961 -2.178 0.286 2.397 sum 6.137 -7.316 -9.559 13.511 Atomic orbital electron populations 1.21704 0.94539 1.02045 1.01124 1.22164 0.96679 0.88925 1.00257 1.61874 1.17672 1.16871 1.27350 1.19586 0.93082 0.95133 0.85089 1.22299 1.51101 0.91898 0.97327 0.92753 1.27373 0.93072 1.11313 0.91862 1.70909 1.48593 1.12404 1.26102 0.82872 0.77712 0.69079 0.76039 1.20003 1.19416 1.20861 1.22308 0.90023 1.06024 0.90484 0.91249 1.23194 1.02651 0.92308 1.00843 1.22371 0.99228 0.95941 0.97950 0.87739 1.21610 0.94171 0.96097 0.84545 1.86420 1.44002 1.75526 1.33643 0.95086 0.92552 0.89824 0.89623 0.96352 1.02691 0.97686 0.93878 0.89683 0.87657 0.92079 0.92479 0.75005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.96 71.99 0.72 -3.96 16 2 C 0.05 1.75 5.64 86.31 0.49 2.23 16 3 N -0.51 -22.91 4.50 -875.51 -3.94 -26.86 16 4 C 0.20 10.69 3.92 85.56 0.34 11.03 16 5 C -0.59 -34.29 8.99 25.60 0.23 -34.06 16 6 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 7 C -0.04 -2.33 5.46 84.65 0.46 -1.87 16 8 N -0.94 -59.15 13.65 21.45 0.29 -58.86 16 9 Si 1.12 51.45 29.90 68.60 2.05 53.50 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.02 0.81 4.65 44.91 0.21 1.02 16 14 H 0.07 2.84 7.90 -2.38 -0.02 2.83 16 15 C -0.15 -5.33 10.11 30.62 0.31 -5.02 16 16 C -0.14 -4.24 5.04 -10.78 -0.05 -4.29 16 17 H 0.10 3.40 7.35 -2.39 -0.02 3.39 16 18 C 0.11 2.71 7.33 71.98 0.53 3.23 16 19 O -0.59 -13.07 13.66 -148.98 -2.03 -15.11 16 20 H 0.03 1.19 6.90 -2.39 -0.02 1.17 16 21 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.09 2.76 6.38 -2.39 -0.02 2.74 16 24 H 0.02 0.69 8.00 -2.39 -0.02 0.67 16 25 H -0.04 -2.56 7.83 -2.39 -0.02 -2.58 16 26 H 0.01 0.30 6.24 -2.39 -0.01 0.28 16 27 H 0.25 16.06 7.19 -92.71 -0.67 15.39 16 28 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.11 3.25 8.03 -2.39 -0.02 3.23 16 30 H 0.06 1.31 7.88 -2.39 -0.02 1.29 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.40 4.51 9.12 -74.06 -0.68 3.84 16 Total: -1.00 -69.16 267.32 0.11 -69.06 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.52 Total: 9.95 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 3.22 Total: -31.68 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -3.65 Total: -85.72 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -2.03 Total: -15.11 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -69.16 0.11 -69.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379339070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.495 kcal (2) G-P(sol) polarization free energy of solvation -69.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds