Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99607 * 2 1 4 4 C 1.52994 * 112.85301 * 294.86864 * 3 2 1 5 5 C 1.53001 * 109.47229 * 289.29967 * 4 3 2 6 6 N 1.46505 * 109.46991 * 174.92929 * 5 4 3 7 7 C 1.36936 * 119.99840 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99850 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99921 * 180.02562 * 7 6 5 10 10 N 1.31616 * 120.00010 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99924 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47099 * 89.99959 * 11 9 7 13 13 H 1.48501 * 109.47230 * 209.99931 * 11 9 7 14 14 H 1.48502 * 109.47403 * 330.00276 * 11 9 7 15 15 C 1.53779 * 113.69087 * 66.14136 * 3 2 1 16 16 C 1.53783 * 87.08198 * 89.11988 * 15 3 2 17 17 C 1.53779 * 87.08180 * 25.43569 * 16 15 3 18 18 H 1.09002 * 109.46778 * 296.24629 * 1 2 3 19 19 H 1.08992 * 109.47024 * 56.24730 * 1 2 3 20 20 H 1.08996 * 109.46734 * 176.24725 * 1 2 3 21 21 H 1.09003 * 109.47181 * 169.29602 * 4 3 2 22 22 H 1.09000 * 109.47014 * 49.30274 * 4 3 2 23 23 H 1.08995 * 109.47016 * 54.92783 * 5 4 3 24 24 H 1.08999 * 109.46802 * 294.92875 * 5 4 3 25 25 H 0.96998 * 120.00244 * 359.97438 * 6 5 4 26 26 H 0.96995 * 119.99858 * 179.97438 * 10 9 7 27 27 H 1.08999 * 113.61551 * 203.67165 * 15 3 2 28 28 H 1.09007 * 113.61414 * 334.57784 * 15 3 2 29 29 H 1.08993 * 113.61997 * 270.88419 * 16 15 3 30 30 H 1.09008 * 113.68951 * 139.99322 * 16 15 3 31 31 H 1.09000 * 113.61466 * 220.01779 * 17 16 15 32 32 H 1.08999 * 113.61659 * 89.10771 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7102 2.0895 -1.2791 5 6 2.4888 1.4788 -2.4461 6 7 2.1098 2.1513 -3.6912 7 6 2.6808 1.7708 -4.8762 8 1 3.4110 0.9751 -4.8928 9 6 2.3221 2.4084 -6.0559 10 7 1.4327 3.3784 -6.0355 11 14 3.1016 1.8897 -7.6722 12 1 2.2842 0.8174 -8.2944 13 1 3.1663 3.0572 -8.5878 14 1 4.4742 1.3822 -7.4196 15 6 1.7411 2.1016 1.2879 16 6 3.0256 1.4718 1.8521 17 6 3.4962 1.3183 0.3962 18 1 -0.3633 0.4545 0.9217 19 1 -0.3633 0.5709 -0.8544 20 1 -0.3633 -1.0254 -0.0673 21 1 2.0098 3.1291 -1.1468 22 1 0.6421 2.0435 -1.4913 23 1 2.2565 0.4166 -2.5215 24 1 3.5579 1.6056 -2.2754 25 1 1.4538 2.8657 -3.6763 26 1 1.1823 3.8241 -6.8598 27 1 1.8062 3.1816 1.1552 28 1 0.8366 1.7921 1.8116 29 1 2.8595 0.5217 2.3598 30 1 3.6325 2.1635 2.4365 31 1 4.0085 0.3764 0.1999 32 1 4.0409 2.1841 0.0197 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381889543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = -39.991641 kcal Electronic energy + Delta-G solvation = -13009.327643 eV Core-core repulsion = 10777.099506 eV Total energy + Delta-G solvation = -2232.228136 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97255 -36.77785 -36.45766 -33.75536 -30.80095 -27.99034 -26.79317 -26.10592 -24.09970 -22.43573 -20.35992 -19.23842 -17.16379 -16.88877 -16.52943 -16.11127 -15.55315 -15.31068 -15.21570 -14.78680 -14.33778 -13.34254 -13.09148 -13.02019 -12.91211 -12.62435 -12.24424 -12.15851 -12.02240 -11.91828 -11.70495 -11.63930 -10.99413 -10.92085 -10.25444 -9.03999 -7.98250 -5.28038 1.45399 1.47989 1.56722 2.53857 2.76452 3.34959 3.50435 3.69674 3.80548 3.93033 4.27349 4.35028 4.42496 4.47896 4.59643 4.63894 4.73284 4.83203 4.88157 4.89404 5.05977 5.10333 5.17110 5.27615 5.39619 5.44313 5.45607 6.24200 6.35401 7.29899 8.04832 8.29806 9.25521 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.058643 B = 0.007196 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.346729 B = 3889.892001 C = 3988.877443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.382 6.382 3 C 0.086 3.914 4 C -0.129 4.129 5 C 0.161 3.839 6 N -0.748 5.748 7 C -0.251 4.251 8 H 0.073 0.927 9 C -0.076 4.076 10 N -0.970 5.970 11 Si 0.977 3.023 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.269 1.269 15 C -0.156 4.156 16 C -0.123 4.123 17 C -0.129 4.129 18 H 0.059 0.941 19 H 0.033 0.967 20 H 0.097 0.903 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.009 0.991 24 H 0.021 0.979 25 H 0.373 0.627 26 H 0.253 0.747 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -3.577 15.936 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.301 6.301 3 C 0.045 3.955 4 C -0.167 4.167 5 C 0.035 3.965 6 N -0.391 5.391 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.805 3.195 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.194 1.194 15 C -0.193 4.193 16 C -0.160 4.160 17 C -0.166 4.166 18 H 0.078 0.922 19 H 0.052 0.948 20 H 0.115 0.885 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.205 0.795 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.656 -3.856 15.846 16.322 hybrid contribution -0.296 0.265 -1.265 1.326 sum 0.360 -3.591 14.581 15.021 Atomic orbital electron populations 1.22870 0.80359 1.03422 1.00556 1.87854 1.20829 1.26536 1.94853 1.22634 0.96217 0.83651 0.92957 1.22056 1.00223 0.99891 0.94548 1.20618 0.96397 0.94382 0.85083 1.42624 1.50567 1.42821 1.03078 1.19660 1.17893 1.14246 0.86508 0.90939 1.25623 1.00654 0.99119 1.01372 1.69817 1.37145 1.27737 1.27393 0.85088 0.78305 0.76859 0.79205 1.21236 1.21722 1.19407 1.23533 0.99538 1.00587 0.95684 1.22717 0.96526 1.01442 0.95300 1.23047 0.93535 1.02857 0.97196 0.92214 0.94837 0.88478 0.90442 0.92407 0.97331 0.96105 0.79509 0.93830 0.88375 0.90307 0.89840 0.89496 0.91420 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.63 113.37 1.21 1.80 16 2 O -0.38 -11.66 10.44 -148.98 -1.55 -13.22 16 3 C 0.09 2.43 0.72 -10.27 -0.01 2.42 16 4 C -0.13 -4.47 4.82 30.59 0.15 -4.32 16 5 C 0.16 7.10 5.96 86.38 0.52 7.61 16 6 N -0.75 -40.72 5.60 -343.44 -1.92 -42.64 16 7 C -0.25 -14.84 9.99 84.03 0.84 -14.00 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 9 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 10 N -0.97 -60.96 13.06 21.65 0.28 -60.67 16 11 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 15 C -0.16 -3.36 7.21 31.12 0.22 -3.14 16 16 C -0.12 -2.44 8.02 31.12 0.25 -2.19 16 17 C -0.13 -3.28 6.63 31.12 0.21 -3.08 16 18 H 0.06 1.20 6.85 -2.39 -0.02 1.19 16 19 H 0.03 0.93 6.47 -2.39 -0.02 0.91 16 20 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 21 H 0.08 2.56 7.95 -2.39 -0.02 2.54 16 22 H 0.06 2.07 6.49 -2.39 -0.02 2.05 16 23 H 0.01 0.41 8.04 -2.39 -0.02 0.39 16 24 H 0.02 0.91 7.65 -2.39 -0.02 0.89 16 25 H 0.37 21.24 7.67 -92.71 -0.71 20.53 16 26 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.10 1.95 7.97 -2.39 -0.02 1.93 16 28 H 0.08 1.54 6.82 -2.38 -0.02 1.53 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 2.40 8.10 -2.39 -0.02 2.38 16 Total: -1.00 -67.12 262.17 3.06 -64.06 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.38 Total: 22.03 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 3.85 Total: -18.92 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -1.64 Total: -103.31 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.55 Total: -13.22 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -67.12 3.06 -64.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381889543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.065 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds