Wall clock time and date at job start Mon Mar 30 2020 02:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.46865 * 2 1 4 4 C 1.42905 * 113.99791 * 179.97438 * 3 2 1 5 5 C 1.53932 * 113.73356 * 209.99893 * 4 3 2 6 6 N 1.47962 * 86.30325 * 269.30518 * 5 4 3 7 7 C 1.46897 * 110.99847 * 222.47152 * 6 5 4 8 8 H 1.09000 * 109.47439 * 52.74274 * 7 6 5 9 9 C 1.53001 * 109.46761 * 172.73682 * 7 6 5 10 10 C 1.50695 * 109.47560 * 292.73873 * 7 6 5 11 11 H 1.08007 * 119.99464 * 0.02562 * 10 7 6 12 12 C 1.37874 * 120.00380 * 180.02562 * 10 7 6 13 13 N 1.31511 * 119.99874 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00207 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47170 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47480 * 119.99520 * 14 12 10 17 17 H 1.48502 * 109.46866 * 239.99600 * 14 12 10 18 18 C 1.48189 * 90.67151 * 335.40998 * 6 5 4 19 19 H 1.09000 * 109.47384 * 299.99915 * 1 2 3 20 20 H 1.08998 * 109.46701 * 60.00111 * 1 2 3 21 21 H 1.08999 * 109.46845 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47240 * 239.99553 * 2 1 3 23 23 H 1.08998 * 109.46701 * 119.99889 * 2 1 3 24 24 H 1.09004 * 112.93747 * 341.56480 * 4 3 2 25 25 H 1.09000 * 113.75993 * 23.68483 * 5 4 3 26 26 H 1.09002 * 113.75572 * 154.93239 * 5 4 3 27 27 H 1.09001 * 109.47238 * 185.94074 * 9 7 6 28 28 H 1.09000 * 109.47550 * 305.94648 * 9 7 6 29 29 H 1.09000 * 109.47061 * 65.94599 * 9 7 6 30 30 H 0.96997 * 120.00487 * 180.02562 * 13 12 10 31 31 H 1.08996 * 113.65728 * 270.26839 * 18 6 5 32 32 H 1.09001 * 113.92098 * 138.95362 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9518 2.7257 0.7052 6 7 3.8786 3.3780 -0.6209 7 6 5.0634 4.2119 -0.8634 8 1 5.9640 3.6195 -0.7018 9 6 5.0410 4.7225 -2.3055 10 6 5.0559 5.3834 0.0845 11 1 4.2515 5.4968 0.7963 12 6 6.0757 6.3103 0.0431 13 7 7.0553 6.1718 -0.8233 14 14 6.0667 7.7621 1.2186 15 1 4.8643 7.6885 2.0869 16 1 7.2891 7.7246 2.0609 17 1 6.0393 9.0275 0.4420 18 6 4.0051 2.0638 -1.2938 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.9295 0.5444 0.3184 25 1 3.2572 3.1385 1.4367 26 1 4.9666 2.6274 1.0908 27 1 5.9695 5.2526 -2.5178 28 1 4.9400 3.8789 -2.9883 29 1 4.1975 5.4001 -2.4380 30 1 7.7730 6.8237 -0.8523 31 1 5.0361 1.7726 -1.4944 32 1 3.3538 1.9462 -2.1599 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383093427.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:16 Heat of formation + Delta-G solvation = -13.442472 kcal Electronic energy + Delta-G solvation = -13050.569975 eV Core-core repulsion = 10819.493097 eV Total energy + Delta-G solvation = -2231.076878 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.36627 -36.60945 -33.38023 -31.09243 -29.83788 -26.05034 -25.24212 -24.45519 -22.69964 -20.37940 -19.13292 -16.64285 -16.08288 -15.53196 -15.29082 -14.36611 -13.68062 -13.51130 -13.23552 -12.52610 -12.44021 -11.99106 -11.74633 -11.50320 -11.11233 -10.95286 -10.80960 -10.71645 -10.44996 -10.12696 -10.01663 -9.43156 -9.09082 -8.84037 -8.43823 -7.55762 -5.99087 -4.03137 3.31541 3.39238 3.45003 3.83619 4.44148 4.91723 4.98519 5.16982 5.29698 5.32936 5.40021 5.43526 5.65999 5.93586 5.96612 6.10671 6.16962 6.28503 6.42780 6.55175 6.77985 6.90669 7.09351 7.42977 7.48818 7.61447 7.85553 8.10278 8.32206 8.54390 9.03671 9.61883 11.08314 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.058517 B = 0.007956 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.382397 B = 3518.394863 C = 3786.901412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.054 3.946 5 C 0.022 3.978 6 N -0.463 5.463 7 C 0.177 3.823 8 H 0.004 0.996 9 C -0.125 4.125 10 C -0.501 4.501 11 H 0.062 0.938 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.017 4.017 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.005 0.995 29 H 0.034 0.966 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 -10.917 1.294 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.273 6.273 4 C -0.005 4.005 5 C -0.107 4.107 6 N -0.187 5.187 7 C 0.070 3.930 8 H 0.022 0.978 9 C -0.184 4.184 10 C -0.540 4.540 11 H 0.080 0.920 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.147 4.147 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.024 0.976 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.163 -10.202 1.073 12.512 hybrid contribution 1.103 0.195 0.667 1.304 sum -6.060 -10.006 1.740 11.827 Atomic orbital electron populations 1.21723 0.94071 1.01692 1.03213 1.22488 0.95401 0.84830 0.99548 1.88002 1.19922 1.24903 1.94468 1.23727 0.81424 0.97636 0.97666 1.23892 0.99860 0.91583 0.95404 1.68663 1.40044 1.07733 1.02263 1.19811 0.85956 0.92691 0.94576 0.97840 1.21685 1.02518 0.98268 0.95882 1.21120 1.07550 1.07712 1.17632 0.92025 1.24940 0.95411 0.98077 0.95831 1.69915 1.11490 1.36230 1.35769 0.86461 0.77825 0.82418 0.80849 1.19715 1.21147 1.21016 1.24357 0.99346 0.93437 0.97551 0.91912 0.91834 0.91554 0.93767 0.93822 0.91861 0.89952 0.90714 0.90127 0.97550 0.94630 0.93090 0.91673 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 2 C 0.05 0.68 6.50 37.16 0.24 0.92 16 3 O -0.35 -6.10 10.36 -35.23 -0.37 -6.47 16 4 C 0.05 0.93 4.50 -25.79 -0.12 0.81 16 5 C 0.02 0.44 7.12 -2.77 -0.02 0.42 16 6 N -0.46 -10.73 5.97 -230.93 -1.38 -12.11 16 7 C 0.18 4.64 1.65 -68.87 -0.11 4.52 16 8 H 0.00 0.11 7.69 -51.93 -0.40 -0.29 16 9 C -0.13 -3.22 9.05 37.16 0.34 -2.88 16 10 C -0.50 -14.25 8.21 -34.44 -0.28 -14.53 16 11 H 0.06 1.78 7.71 -52.48 -0.40 1.37 16 12 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 13 N -0.89 -25.99 11.39 55.43 0.63 -25.36 16 14 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.02 -0.33 7.01 -2.64 -0.02 -0.35 16 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 25 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 26 H 0.07 1.51 7.84 -51.93 -0.41 1.10 16 27 H 0.08 2.21 6.25 -51.93 -0.32 1.89 16 28 H 0.01 0.13 7.51 -51.93 -0.39 -0.26 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.07 1.21 7.74 -51.93 -0.40 0.81 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -30.34 264.25 -7.09 -37.43 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -5.25 Total: -3.53 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 0.31 Total: -10.73 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.75 Total: -37.46 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.37 Total: -6.47 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.34 -7.09 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383093427.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.990 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds