Wall clock time and date at job start Mon Mar 30 2020 01:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46794 * 2 1 4 4 C 1.50693 * 109.47417 * 120.00148 * 2 1 3 5 5 H 1.08009 * 120.00046 * 114.31699 * 4 2 1 6 6 C 1.37876 * 120.00344 * 294.32249 * 4 2 1 7 7 N 1.31513 * 120.00472 * 155.04852 * 6 4 2 8 8 Si 1.86809 * 119.99627 * 335.31965 * 6 4 2 9 9 H 1.48494 * 109.46841 * 179.72766 * 8 6 4 10 10 H 1.48497 * 109.46901 * 299.72684 * 8 6 4 11 11 H 1.48501 * 109.46726 * 59.72958 * 8 6 4 12 12 N 1.46897 * 109.46761 * 240.00401 * 2 1 3 13 13 C 1.46904 * 111.00054 * 183.95091 * 12 2 1 14 14 C 1.46901 * 111.00395 * 59.99587 * 12 2 1 15 15 C 1.52998 * 109.47600 * 189.99939 * 14 12 2 16 16 C 1.54039 * 113.81629 * 273.51075 * 15 14 12 17 17 O 1.44441 * 85.42254 * 223.23564 * 16 15 14 18 18 C 1.44169 * 93.38481 * 24.08907 * 17 16 15 19 19 H 1.09001 * 109.47132 * 171.91475 * 1 2 3 20 20 H 1.09002 * 109.46962 * 291.91327 * 1 2 3 21 21 H 1.08998 * 109.47417 * 51.91130 * 1 2 3 22 22 H 0.97000 * 119.99785 * 355.21976 * 7 6 4 23 23 H 1.09002 * 109.46603 * 59.99758 * 13 12 2 24 24 H 1.08996 * 109.47049 * 179.97438 * 13 12 2 25 25 H 1.08994 * 109.47094 * 299.99946 * 13 12 2 26 26 H 1.08996 * 109.47188 * 310.00376 * 14 12 2 27 27 H 1.09007 * 109.46801 * 70.00069 * 14 12 2 28 28 H 1.09004 * 112.99805 * 45.32959 * 15 14 12 29 29 H 1.08998 * 113.86122 * 337.33763 * 16 15 14 30 30 H 1.08998 * 113.86699 * 109.04465 * 16 15 14 31 31 H 1.08999 * 113.87029 * 221.77192 * 18 17 16 32 32 H 1.09000 * 113.98544 * 90.07139 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5756 -1.6390 1.1339 6 6 1.7986 -0.1751 2.4793 7 7 1.7729 -0.9578 3.5359 8 14 1.5107 1.6608 2.6696 9 1 1.2783 1.9795 4.1012 10 1 2.7029 2.4016 2.1847 11 1 0.3221 2.0604 1.8742 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0263 -2.4211 15 6 1.8624 -0.9042 -3.6342 16 6 3.2739 -0.6861 -4.2112 17 8 2.6266 -0.7254 -5.5019 18 6 1.3473 -0.3300 -4.9676 19 1 -0.3633 -1.0175 -0.1445 20 1 -0.3633 0.3835 0.9534 21 1 -0.3634 0.6339 -0.8088 22 1 1.8492 -1.9189 3.4295 23 1 3.8029 -1.3531 -0.3069 24 1 3.8207 -1.3115 -2.0861 25 1 3.9186 0.2052 -1.1593 26 1 0.4721 0.1325 -2.3563 27 1 2.0517 0.9347 -2.5281 28 1 1.6077 -1.9525 -3.4787 29 1 3.7063 0.2834 -3.9641 30 1 3.9564 -1.5171 -4.0331 31 1 0.5049 -0.8793 -5.3880 32 1 1.1880 0.7482 -4.9512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388381335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:12 Heat of formation + Delta-G solvation = -29.536308 kcal Electronic energy + Delta-G solvation = -13291.441253 eV Core-core repulsion = 11059.666494 eV Total energy + Delta-G solvation = -2231.774759 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.38007 -38.62695 -34.95781 -32.48736 -30.96043 -28.00150 -27.38834 -26.10488 -24.26749 -21.17147 -21.00668 -19.50387 -17.51899 -17.23076 -16.65176 -16.35417 -15.58338 -15.43612 -14.82547 -14.31729 -14.03171 -13.72470 -13.41074 -13.19501 -12.80675 -12.70604 -12.35573 -12.24393 -11.99309 -11.83184 -11.51182 -11.25022 -10.95841 -10.61545 -10.36724 -9.01259 -8.73769 -6.28832 1.45387 1.50617 1.70754 2.49409 2.75120 3.00412 3.12554 3.49602 3.96913 4.27079 4.31969 4.40943 4.41557 4.54828 4.61237 4.62108 4.71210 4.80112 4.89655 4.90917 5.06846 5.11251 5.15196 5.23473 5.29330 5.53648 5.88656 6.09440 6.23563 6.61948 6.76414 7.44091 8.63022 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061798 B = 0.008782 C = 0.008457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.980093 B = 3187.505046 C = 3310.105093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.189 3.811 3 H -0.011 1.011 4 C -0.599 4.599 5 H 0.026 0.974 6 C -0.013 4.013 7 N -0.931 5.931 8 Si 1.075 2.925 9 H -0.288 1.288 10 H -0.271 1.271 11 H -0.248 1.248 12 N -0.544 5.544 13 C 0.041 3.959 14 C 0.051 3.949 15 C -0.145 4.145 16 C 0.037 3.963 17 O -0.409 6.409 18 C 0.045 3.955 19 H 0.043 0.957 20 H 0.040 0.960 21 H 0.057 0.943 22 H 0.254 0.746 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.015 0.985 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 4.581 -14.460 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.081 3.919 3 H 0.006 0.994 4 C -0.636 4.636 5 H 0.044 0.956 6 C -0.212 4.212 7 N -0.566 5.566 8 Si 0.896 3.104 9 H -0.214 1.214 10 H -0.196 1.196 11 H -0.172 1.172 12 N -0.269 5.269 13 C -0.108 4.108 14 C -0.076 4.076 15 C -0.164 4.164 16 C -0.039 4.039 17 O -0.329 6.329 18 C -0.031 4.031 19 H 0.062 0.938 20 H 0.059 0.941 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.033 0.967 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.316 5.213 -13.594 14.618 hybrid contribution 0.787 -0.955 -0.361 1.289 sum -0.528 4.258 -13.955 14.600 Atomic orbital electron populations 1.22037 0.96732 1.00495 0.99885 1.19444 0.92868 0.91352 0.88270 0.99379 1.22066 1.39698 1.09310 0.92562 0.95598 1.26983 0.92939 1.09263 0.92041 1.70970 1.46839 1.05441 1.33318 0.83650 0.78772 0.71506 0.76446 1.21395 1.19640 1.17247 1.61963 1.10361 1.52566 1.01976 1.22231 0.87912 0.99193 1.01415 1.22294 1.01316 0.94787 0.89249 1.24294 0.96072 1.01637 0.94349 1.24281 0.96024 1.02369 0.81254 1.89655 1.24201 1.89251 1.29756 1.24117 0.87752 1.01013 0.90259 0.93787 0.94115 0.92423 0.93712 0.93872 0.90279 0.96655 0.89830 0.94792 0.88265 0.89611 0.88671 0.87557 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.47 71.98 0.61 -4.98 16 2 C 0.19 8.71 1.66 44.17 0.07 8.78 16 3 H -0.01 -0.51 6.70 -2.39 -0.02 -0.53 16 4 C -0.60 -33.65 7.98 25.60 0.20 -33.45 16 5 H 0.03 1.62 6.88 -2.91 -0.02 1.60 16 6 C -0.01 -0.72 5.15 84.65 0.44 -0.29 16 7 N -0.93 -57.95 13.70 21.45 0.29 -57.66 16 8 Si 1.07 49.36 26.49 68.60 1.82 51.18 16 9 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.25 -10.14 6.29 99.48 0.63 -9.51 16 12 N -0.54 -21.66 4.62 -901.49 -4.17 -25.83 16 13 C 0.04 1.53 8.78 127.69 1.12 2.65 16 14 C 0.05 1.56 4.70 86.30 0.41 1.96 16 15 C -0.14 -3.69 3.71 -10.09 -0.04 -3.72 16 16 C 0.04 0.90 6.90 72.30 0.50 1.39 16 17 O -0.41 -10.84 12.46 -148.98 -1.86 -12.70 16 18 C 0.05 0.96 8.79 72.30 0.64 1.59 16 19 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 20 H 0.04 1.78 5.67 -2.39 -0.01 1.77 16 21 H 0.06 1.97 6.64 -2.39 -0.02 1.95 16 22 H 0.25 16.11 8.73 -92.71 -0.81 15.30 16 23 H 0.04 1.90 6.34 -2.39 -0.02 1.88 16 24 H 0.08 2.42 5.14 -2.39 -0.01 2.41 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.08 2.42 6.00 -2.39 -0.01 2.41 16 27 H 0.03 0.99 7.86 -2.38 -0.02 0.97 16 28 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 29 H 0.09 1.95 7.92 -2.39 -0.02 1.93 16 30 H 0.10 2.18 7.43 -2.39 -0.02 2.16 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.69 8.10 -2.39 -0.02 1.68 16 Total: -1.00 -64.77 249.88 1.01 -63.77 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.97 Total: 7.30 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 3.95 Total: -26.06 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -3.87 Total: -83.49 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.86 Total: -12.70 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.82 Total: 51.18 kcal Total: -64.77 1.01 -63.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388381335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.230 kcal (2) G-P(sol) polarization free energy of solvation -64.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds