Wall clock time and date at job start Mon Mar 30 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47165 * 2 1 4 4 C 1.42899 * 114.00251 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54568 * 4.32863 * 4 3 2 6 6 C 1.53003 * 117.51743 * 218.62895 * 4 3 2 7 7 C 1.52998 * 59.99901 * 252.51655 * 6 4 3 8 8 H 1.08996 * 117.51622 * 252.51958 * 7 6 4 9 9 N 1.46900 * 117.49671 * 107.49433 * 7 6 4 10 10 C 1.46901 * 111.00179 * 136.37752 * 9 7 6 11 11 H 1.09000 * 109.46707 * 34.99556 * 10 9 7 12 12 C 1.53003 * 109.46813 * 274.99999 * 10 9 7 13 13 C 1.50694 * 109.46996 * 154.99583 * 10 9 7 14 14 H 1.07994 * 120.00322 * 5.35489 * 13 10 9 15 15 C 1.37877 * 119.99793 * 185.34882 * 13 10 9 16 16 N 1.31512 * 120.00153 * 5.14509 * 15 13 10 17 17 Si 1.86805 * 120.00027 * 185.14863 * 15 13 10 18 18 H 1.48494 * 109.47129 * 84.99874 * 17 15 13 19 19 H 1.48495 * 109.47057 * 324.99826 * 17 15 13 20 20 H 1.48504 * 109.46975 * 205.00046 * 17 15 13 21 21 H 1.08994 * 109.47044 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46740 * 300.00029 * 1 2 3 23 23 H 1.09004 * 109.47163 * 59.99528 * 1 2 3 24 24 H 1.09002 * 109.47073 * 240.00377 * 2 1 3 25 25 H 1.08991 * 109.47421 * 120.00345 * 2 1 3 26 26 H 1.09000 * 117.49203 * 145.02423 * 6 4 3 27 27 H 1.08998 * 117.49856 * 0.02562 * 6 4 3 28 28 H 1.00907 * 110.99354 * 260.32730 * 9 7 6 29 29 H 1.08992 * 109.47480 * 54.97230 * 12 10 9 30 30 H 1.08993 * 109.46657 * 174.97766 * 12 10 9 31 31 H 1.09004 * 109.46489 * 294.97280 * 12 10 9 32 32 H 0.96997 * 120.00294 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9769 0.5197 -0.0752 6 6 4.0522 2.5726 0.8464 7 6 4.0420 2.6877 -0.6792 8 1 4.9900 2.5548 -1.2005 9 7 3.1195 3.6604 -1.2798 10 6 3.7774 4.4161 -2.3542 11 1 4.4782 3.7665 -2.8786 12 6 4.5336 5.6028 -1.7536 13 6 2.7387 4.9202 -3.3225 14 1 1.6892 4.7763 -3.1121 15 6 3.1281 5.5654 -4.4771 16 7 4.4040 5.6519 -4.7837 17 14 1.8433 6.3168 -5.6059 18 1 1.5016 7.6807 -5.1283 19 1 0.6233 5.4702 -5.6000 20 1 2.3836 6.3967 -6.9869 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 5.0070 2.3639 1.3291 27 1 3.3744 3.2183 1.4046 28 1 2.2840 3.2059 -1.6168 29 1 5.2225 5.2452 -0.9885 30 1 5.0939 6.1112 -2.5382 31 1 3.8228 6.2977 -1.3063 32 1 4.6780 6.1061 -5.5958 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388394798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:09 Heat of formation + Delta-G solvation = -24.199533 kcal Electronic energy + Delta-G solvation = -12825.756452 eV Core-core repulsion = 10594.213113 eV Total energy + Delta-G solvation = -2231.543339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.42364 -35.95356 -33.93695 -31.51813 -30.49214 -27.50751 -25.05913 -22.75822 -21.68576 -20.86911 -19.64423 -16.68713 -16.47899 -15.37460 -14.98675 -14.57209 -13.95408 -13.48394 -12.90072 -12.44895 -12.33189 -12.19703 -11.69901 -11.39665 -11.01060 -10.90404 -10.79517 -10.63484 -10.55041 -10.23319 -9.99468 -9.86552 -8.85319 -8.63573 -8.41670 -7.10373 -6.01318 -4.04409 3.33425 3.38936 3.42342 3.74163 4.34976 4.43904 4.99967 5.12200 5.20143 5.32218 5.34158 5.40295 5.57098 5.72043 5.95350 5.98859 6.04403 6.17260 6.18975 6.54720 6.91890 7.17324 7.24891 7.47300 7.57434 7.84414 7.91756 8.23467 8.46627 8.76102 9.08179 9.60931 11.07842 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036152 B = 0.008644 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.323600 B = 3238.569187 C = 3831.423154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.346 6.346 4 C -0.007 4.007 5 H 0.100 0.900 6 C -0.186 4.186 7 C 0.040 3.960 8 H 0.095 0.905 9 N -0.653 5.653 10 C 0.210 3.790 11 H 0.008 0.992 12 C -0.118 4.118 13 C -0.519 4.519 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.275 1.275 20 H -0.288 1.288 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.343 0.657 29 H 0.010 0.990 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 -9.604 7.844 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.264 6.264 4 C -0.067 4.067 5 H 0.117 0.883 6 C -0.225 4.225 7 C -0.072 4.072 8 H 0.113 0.887 9 N -0.285 5.285 10 C 0.103 3.897 11 H 0.025 0.975 12 C -0.176 4.176 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.200 1.200 20 H -0.214 1.214 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.164 0.836 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.420 -8.877 8.144 12.287 hybrid contribution -0.359 -0.415 -1.275 1.388 sum -2.780 -9.292 6.869 11.885 Atomic orbital electron populations 1.21734 0.93903 1.01828 1.03374 1.22459 0.95443 0.84297 0.99602 1.87879 1.18896 1.25457 1.94196 1.23075 0.81881 0.94082 1.07640 0.88268 1.23607 1.01298 1.01574 0.95987 1.22978 0.97399 0.92933 0.93891 0.88731 1.60262 1.07055 1.24463 1.36695 1.19196 0.93341 0.91090 0.86086 0.97454 1.21635 0.98259 0.99439 0.98283 1.21252 0.92994 1.37518 1.04013 0.92161 1.24918 0.95342 0.96175 0.97470 1.69947 1.14631 1.43077 1.25370 0.86560 0.81650 0.79856 0.79618 1.20519 1.19961 1.21364 0.91445 0.91940 0.91558 0.93570 0.93818 0.89159 0.88160 0.83642 0.97129 0.91802 0.94761 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 16 2 C 0.06 0.75 6.53 37.16 0.24 0.99 16 3 O -0.35 -5.84 9.80 -35.23 -0.35 -6.18 16 4 C -0.01 -0.12 6.42 -26.73 -0.17 -0.29 16 5 H 0.10 1.34 7.93 -51.93 -0.41 0.92 16 6 C -0.19 -3.04 10.41 -26.73 -0.28 -3.32 16 7 C 0.04 0.78 5.98 -67.71 -0.40 0.37 16 8 H 0.10 1.83 7.60 -51.93 -0.39 1.43 16 9 N -0.65 -15.00 6.48 -100.96 -0.65 -15.65 16 10 C 0.21 5.53 2.43 -68.87 -0.17 5.36 16 11 H 0.01 0.22 7.55 -51.93 -0.39 -0.17 16 12 C -0.12 -3.00 9.21 37.16 0.34 -2.66 16 13 C -0.52 -14.71 8.50 -34.44 -0.29 -15.01 16 14 H 0.06 1.70 7.68 -52.49 -0.40 1.30 16 15 C 0.06 1.78 5.29 -17.82 -0.09 1.68 16 16 N -0.89 -26.06 11.98 55.43 0.66 -25.40 16 17 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 28 H 0.34 8.03 7.58 -39.29 -0.30 7.73 16 29 H 0.01 0.23 7.99 -51.93 -0.41 -0.19 16 30 H 0.06 1.73 6.84 -51.93 -0.36 1.38 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 270.78 15.07 4.08 4.08 Total: -1.00 -29.80 270.78 -6.90 -36.71 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.19 Total: 3.91 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.44 Total: -14.16 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.01 Total: -41.05 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.35 Total: -6.18 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.80 -6.90 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388394798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.509 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds