Wall clock time and date at job start Mon Mar 30 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47165 * 2 1 4 4 C 1.42899 * 114.00251 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54568 * 4.32863 * 4 3 2 6 6 C 1.53003 * 117.51743 * 218.62895 * 4 3 2 7 7 C 1.52998 * 59.99901 * 252.51655 * 6 4 3 8 8 H 1.08996 * 117.51622 * 252.51958 * 7 6 4 9 9 N 1.46900 * 117.49671 * 107.49433 * 7 6 4 10 10 C 1.46901 * 111.00179 * 136.37752 * 9 7 6 11 11 H 1.09000 * 109.46707 * 34.99556 * 10 9 7 12 12 C 1.53003 * 109.46813 * 274.99999 * 10 9 7 13 13 C 1.50694 * 109.46996 * 154.99583 * 10 9 7 14 14 H 1.07994 * 120.00322 * 5.35489 * 13 10 9 15 15 C 1.37877 * 119.99793 * 185.34882 * 13 10 9 16 16 N 1.31512 * 120.00153 * 5.14509 * 15 13 10 17 17 Si 1.86805 * 120.00027 * 185.14863 * 15 13 10 18 18 H 1.48494 * 109.47129 * 84.99874 * 17 15 13 19 19 H 1.48495 * 109.47057 * 324.99826 * 17 15 13 20 20 H 1.48504 * 109.46975 * 205.00046 * 17 15 13 21 21 H 1.08994 * 109.47044 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46740 * 300.00029 * 1 2 3 23 23 H 1.09004 * 109.47163 * 59.99528 * 1 2 3 24 24 H 1.09002 * 109.47073 * 240.00377 * 2 1 3 25 25 H 1.08991 * 109.47421 * 120.00345 * 2 1 3 26 26 H 1.09000 * 117.49203 * 145.02423 * 6 4 3 27 27 H 1.08998 * 117.49856 * 0.02562 * 6 4 3 28 28 H 1.00907 * 110.99354 * 260.32730 * 9 7 6 29 29 H 1.08992 * 109.47480 * 54.97230 * 12 10 9 30 30 H 1.08993 * 109.46657 * 174.97766 * 12 10 9 31 31 H 1.09004 * 109.46489 * 294.97280 * 12 10 9 32 32 H 0.96997 * 120.00294 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9769 0.5197 -0.0752 6 6 4.0522 2.5726 0.8464 7 6 4.0420 2.6877 -0.6792 8 1 4.9900 2.5548 -1.2005 9 7 3.1195 3.6604 -1.2798 10 6 3.7774 4.4161 -2.3542 11 1 4.4782 3.7665 -2.8786 12 6 4.5336 5.6028 -1.7536 13 6 2.7387 4.9202 -3.3225 14 1 1.6892 4.7763 -3.1121 15 6 3.1281 5.5654 -4.4771 16 7 4.4040 5.6519 -4.7837 17 14 1.8433 6.3168 -5.6059 18 1 1.5016 7.6807 -5.1283 19 1 0.6233 5.4702 -5.6000 20 1 2.3836 6.3967 -6.9869 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 5.0070 2.3639 1.3291 27 1 3.3744 3.2183 1.4046 28 1 2.2840 3.2059 -1.6168 29 1 5.2225 5.2452 -0.9885 30 1 5.0939 6.1112 -2.5382 31 1 3.8228 6.2977 -1.3063 32 1 4.6780 6.1061 -5.5958 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388394798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:09 Heat of formation + Delta-G solvation = -44.553522 kcal Electronic energy + Delta-G solvation = -12826.639067 eV Core-core repulsion = 10594.213113 eV Total energy + Delta-G solvation = -2232.425954 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.75296 -37.51718 -35.68672 -33.45189 -31.57240 -29.42064 -27.23466 -23.73129 -22.95097 -22.61620 -21.43537 -18.59541 -17.87250 -16.90327 -16.41271 -16.21242 -15.41411 -15.32720 -14.64064 -13.80989 -13.62317 -13.48369 -13.28650 -12.99449 -12.80006 -12.55372 -12.47649 -12.33586 -12.07736 -12.06539 -11.65600 -11.48838 -10.92373 -10.55953 -9.98497 -8.88241 -8.17573 -6.28787 1.40561 1.42557 1.51946 2.40534 2.58380 2.99835 3.13913 3.49784 4.03284 4.15286 4.20813 4.36839 4.49459 4.52518 4.55999 4.80276 4.87024 4.95062 5.05493 5.07205 5.15092 5.18401 5.30283 5.45988 5.67192 5.81457 6.14231 6.37556 6.48374 6.82184 6.99647 7.41357 8.91227 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036152 B = 0.008644 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.323600 B = 3238.569187 C = 3831.423154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.376 6.376 4 C 0.014 3.986 5 H 0.133 0.867 6 C -0.168 4.168 7 C -0.003 4.003 8 H 0.089 0.911 9 N -0.654 5.654 10 C 0.216 3.784 11 H -0.024 1.024 12 C -0.104 4.104 13 C -0.542 4.542 14 H 0.055 0.945 15 C 0.015 3.985 16 N -0.920 5.920 17 Si 0.962 3.038 18 H -0.274 1.274 19 H -0.268 1.268 20 H -0.281 1.281 21 H 0.096 0.904 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.335 0.665 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.100 -10.614 8.559 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.295 6.295 4 C -0.045 4.045 5 H 0.150 0.850 6 C -0.207 4.207 7 C -0.115 4.115 8 H 0.107 0.893 9 N -0.285 5.285 10 C 0.108 3.892 11 H -0.007 1.007 12 C -0.163 4.163 13 C -0.580 4.580 14 H 0.073 0.927 15 C -0.184 4.184 16 N -0.559 5.559 17 Si 0.787 3.213 18 H -0.199 1.199 19 H -0.193 1.193 20 H -0.206 1.206 21 H 0.114 0.886 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.141 0.859 27 H 0.106 0.894 28 H 0.154 0.846 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.008 -9.903 8.882 13.639 hybrid contribution -0.170 -0.179 -1.455 1.476 sum -3.179 -10.083 7.427 12.920 Atomic orbital electron populations 1.21767 0.92994 1.03448 1.02443 1.22749 0.96278 0.82619 1.00942 1.87856 1.19196 1.28267 1.94138 1.23174 0.82137 0.94340 1.04832 0.84970 1.23625 1.02543 1.01075 0.93446 1.23057 0.97276 0.95424 0.95748 0.89335 1.60204 1.07331 1.25922 1.35032 1.18989 0.92506 0.91084 0.86657 1.00652 1.21446 0.98083 0.98847 0.97888 1.21553 0.93187 1.38175 1.05076 0.92685 1.25734 0.97390 0.96364 0.98933 1.70060 1.16372 1.43496 1.25929 0.85516 0.79146 0.78990 0.77663 1.19943 1.19295 1.20621 0.88553 0.92201 0.93144 0.92965 0.91584 0.85949 0.89430 0.84561 0.95230 0.93948 0.95263 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 10.28 71.98 0.74 -2.31 16 2 C 0.05 1.16 6.53 71.98 0.47 1.63 16 3 O -0.38 -12.11 9.80 -148.98 -1.46 -13.57 16 4 C 0.01 0.43 6.42 30.59 0.20 0.63 16 5 H 0.13 3.09 7.93 -2.39 -0.02 3.07 16 6 C -0.17 -5.15 10.41 30.59 0.32 -4.83 16 7 C 0.00 -0.13 5.98 44.91 0.27 0.14 16 8 H 0.09 3.44 7.60 -2.39 -0.02 3.42 16 9 N -0.65 -30.46 6.48 -473.32 -3.07 -33.52 16 10 C 0.22 11.63 2.43 44.17 0.11 11.74 16 11 H -0.02 -1.42 7.55 -2.39 -0.02 -1.44 16 12 C -0.10 -5.39 9.21 71.98 0.66 -4.73 16 13 C -0.54 -31.24 8.50 25.60 0.22 -31.02 16 14 H 0.05 3.15 7.68 -2.91 -0.02 3.13 16 15 C 0.02 0.87 5.29 84.65 0.45 1.31 16 16 N -0.92 -54.49 11.98 21.45 0.26 -54.23 16 17 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 22 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.34 16.02 7.58 -89.69 -0.68 15.34 16 29 H 0.03 1.36 7.99 -2.39 -0.02 1.34 16 30 H 0.04 2.34 6.84 -2.39 -0.02 2.32 16 31 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -64.16 270.78 1.59 -62.57 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.40 Total: 19.49 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 3.43 Total: -27.44 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -2.81 Total: -87.75 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.46 Total: -13.57 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.16 1.59 -62.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388394798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.018 kcal (2) G-P(sol) polarization free energy of solvation -64.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds