Wall clock time and date at job start Mon Mar 30 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46604 * 2 1 4 4 C 1.50704 * 109.47210 * 240.00938 * 2 1 3 5 5 H 1.07999 * 119.99622 * 240.00023 * 4 2 1 6 6 C 1.37877 * 120.00172 * 59.99017 * 4 2 1 7 7 N 1.31512 * 119.99715 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99707 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47600 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46966 * 120.00670 * 8 6 4 11 11 H 1.48501 * 109.47229 * 240.00323 * 8 6 4 12 12 N 1.46898 * 109.47270 * 120.00267 * 2 1 3 13 13 C 1.46902 * 110.99916 * 203.80454 * 12 2 1 14 14 H 1.09006 * 109.47006 * 325.41793 * 13 12 2 15 15 C 1.53004 * 109.47161 * 85.41177 * 13 12 2 16 16 O 1.42903 * 109.46623 * 64.61410 * 15 13 12 17 17 C 1.52991 * 109.47152 * 205.41442 * 13 12 2 18 18 C 1.53004 * 117.49997 * 133.67314 * 17 13 12 19 19 C 1.53001 * 117.49964 * 65.05005 * 17 13 12 20 20 H 1.08997 * 109.47609 * 303.58211 * 1 2 3 21 21 H 1.09000 * 109.47623 * 63.59180 * 1 2 3 22 22 H 1.09007 * 109.46640 * 183.58586 * 1 2 3 23 23 H 0.97008 * 119.99285 * 179.97438 * 7 6 4 24 24 H 1.00900 * 111.00276 * 327.75906 * 12 2 1 25 25 H 1.08996 * 109.47288 * 184.61133 * 15 13 12 26 26 H 1.08992 * 109.46856 * 304.61617 * 15 13 12 27 27 H 0.96697 * 113.99801 * 180.02562 * 16 15 13 28 28 H 1.09004 * 115.55467 * 279.38048 * 17 13 12 29 29 H 1.09003 * 117.49612 * 359.97438 * 18 17 13 30 30 H 1.09002 * 117.50235 * 145.02318 * 18 17 13 31 31 H 1.09004 * 117.49984 * 214.97509 * 19 17 13 32 32 H 1.08995 * 117.50073 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9433 0.8303 -2.6033 8 14 2.3213 -1.1199 -4.0080 9 1 3.1456 -2.2872 -3.6041 10 1 1.1660 -1.5862 -4.8162 11 1 3.1465 -0.1869 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 3.3782 -0.2522 1.5437 14 1 3.9344 -0.0416 0.6302 15 6 3.3024 1.0148 2.3982 16 8 2.6676 0.7129 3.6424 17 6 4.0881 -1.3559 2.3301 18 6 5.5179 -1.7103 1.9165 19 6 4.3701 -2.6721 1.6026 20 1 -0.3634 0.5684 0.8561 21 1 -0.3634 0.4571 -0.9204 22 1 -0.3633 -1.0257 0.0643 23 1 0.7092 1.1620 -3.4844 24 1 1.3891 -0.5606 1.9759 25 1 4.3094 1.3877 2.5851 26 1 2.7256 1.7746 1.8709 27 1 2.5849 1.4717 4.2360 28 1 3.8427 -1.4098 3.3908 29 1 5.9526 -1.1572 1.0838 30 1 6.2136 -1.9972 2.7051 31 1 4.3107 -3.5917 2.1848 32 1 4.0495 -2.7517 0.5640 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388398647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:14 Heat of formation + Delta-G solvation = -31.486518 kcal Electronic energy + Delta-G solvation = -13284.608420 eV Core-core repulsion = 11052.749093 eV Total energy + Delta-G solvation = -2231.859327 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.16760 -35.81611 -34.93219 -32.22758 -29.50728 -26.26030 -25.10263 -22.79701 -21.75846 -20.09322 -19.40362 -17.02770 -16.08530 -15.23678 -14.74911 -14.65613 -14.00514 -13.68138 -12.92645 -12.72542 -12.20869 -11.49852 -11.28643 -11.07582 -10.95039 -10.68867 -10.56034 -10.31195 -10.02830 -9.90982 -9.73844 -9.53015 -9.35335 -9.01954 -8.36289 -7.09904 -5.94685 -3.98325 3.32256 3.40281 3.45653 4.30818 4.48062 4.67682 5.15427 5.32732 5.40134 5.47702 5.64150 5.73156 5.93988 6.05261 6.08953 6.23107 6.45718 6.48960 6.71069 6.82595 6.93588 7.05875 7.13779 7.51117 7.81165 7.87874 7.98509 8.39379 8.44284 8.87419 9.10701 9.67112 11.11285 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033054 B = 0.011668 C = 0.009487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.897290 B = 2399.101090 C = 2950.780743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.210 3.790 3 H -0.003 1.003 4 C -0.489 4.489 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.898 5.898 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.674 5.674 13 C 0.127 3.873 14 H 0.091 0.909 15 C 0.047 3.953 16 O -0.568 6.568 17 C -0.127 4.127 18 C -0.194 4.194 19 C -0.161 4.161 20 H 0.004 0.996 21 H 0.089 0.911 22 H 0.033 0.967 23 H 0.258 0.742 24 H 0.325 0.675 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.369 0.631 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.161 -0.235 8.575 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.102 3.898 3 H 0.015 0.985 4 C -0.528 4.528 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.303 5.303 13 C 0.016 3.984 14 H 0.109 0.891 15 C -0.032 4.032 16 O -0.372 6.372 17 C -0.146 4.146 18 C -0.232 4.232 19 C -0.198 4.198 20 H 0.023 0.977 21 H 0.108 0.892 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.143 0.857 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.215 0.785 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.255 -1.284 7.785 9.480 hybrid contribution 0.144 1.145 -0.324 1.199 sum 5.398 -0.139 7.462 9.211 Atomic orbital electron populations 1.21920 0.98349 0.99124 1.00708 1.19180 0.91570 0.91886 0.87118 0.98502 1.21259 1.30055 1.11873 0.89627 0.92012 1.24966 0.95505 0.95197 0.99015 1.69897 1.37528 1.23314 1.23094 0.86510 0.78570 0.79672 0.83073 1.19750 1.21155 1.21297 1.60594 1.01164 1.61216 1.07370 1.21137 0.93102 0.89140 0.95051 0.89093 1.23006 0.95504 0.99502 0.85192 1.86475 1.82623 1.38904 1.29189 1.22110 0.95863 0.97373 0.99223 1.22979 0.91561 1.05492 1.03155 1.22742 1.01431 0.93155 1.02441 0.97654 0.89247 0.94745 0.93219 0.85743 0.94266 0.93641 0.78531 0.88262 0.89287 0.89859 0.90020 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.01 37.16 0.33 -3.21 16 2 C 0.21 5.33 2.42 -68.86 -0.17 5.16 16 3 H 0.00 -0.07 7.13 -51.93 -0.37 -0.44 16 4 C -0.49 -13.58 8.43 -34.44 -0.29 -13.87 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.48 5.30 -17.82 -0.09 1.39 16 7 N -0.90 -25.83 11.30 55.43 0.63 -25.20 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.67 -14.81 6.00 -100.95 -0.61 -15.42 16 13 C 0.13 2.45 2.38 -67.71 -0.16 2.29 16 14 H 0.09 1.95 7.39 -51.93 -0.38 1.56 16 15 C 0.05 0.79 6.69 37.16 0.25 1.03 16 16 O -0.57 -8.60 12.08 -35.23 -0.43 -9.03 16 17 C -0.13 -2.19 5.17 -90.62 -0.47 -2.65 16 18 C -0.19 -2.96 10.18 -26.73 -0.27 -3.23 16 19 C -0.16 -2.73 10.21 -26.73 -0.27 -3.00 16 20 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 21 H 0.09 2.43 5.98 -51.93 -0.31 2.12 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.33 6.95 7.57 -39.29 -0.30 6.65 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.80 7.39 -51.93 -0.38 0.42 16 27 H 0.37 3.78 9.12 45.56 0.42 4.19 16 28 H 0.10 1.70 7.46 -51.93 -0.39 1.32 16 29 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 265.11 15.07 4.00 4.00 Total: -1.00 -29.35 265.11 -6.79 -36.14 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.22 Total: 8.98 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.14 Total: -16.10 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.02 Total: -40.63 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.43 Total: -9.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.35 -6.79 -36.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388398647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.651 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds