Wall clock time and date at job start Mon Mar 30 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46604 * 2 1 4 4 C 1.50704 * 109.47210 * 240.00938 * 2 1 3 5 5 H 1.07999 * 119.99622 * 240.00023 * 4 2 1 6 6 C 1.37877 * 120.00172 * 59.99017 * 4 2 1 7 7 N 1.31512 * 119.99715 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99707 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47600 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46966 * 120.00670 * 8 6 4 11 11 H 1.48501 * 109.47229 * 240.00323 * 8 6 4 12 12 N 1.46898 * 109.47270 * 120.00267 * 2 1 3 13 13 C 1.46902 * 110.99916 * 203.80454 * 12 2 1 14 14 H 1.09006 * 109.47006 * 325.41793 * 13 12 2 15 15 C 1.53004 * 109.47161 * 85.41177 * 13 12 2 16 16 O 1.42903 * 109.46623 * 64.61410 * 15 13 12 17 17 C 1.52991 * 109.47152 * 205.41442 * 13 12 2 18 18 C 1.53004 * 117.49997 * 133.67314 * 17 13 12 19 19 C 1.53001 * 117.49964 * 65.05005 * 17 13 12 20 20 H 1.08997 * 109.47609 * 303.58211 * 1 2 3 21 21 H 1.09000 * 109.47623 * 63.59180 * 1 2 3 22 22 H 1.09007 * 109.46640 * 183.58586 * 1 2 3 23 23 H 0.97008 * 119.99285 * 179.97438 * 7 6 4 24 24 H 1.00900 * 111.00276 * 327.75906 * 12 2 1 25 25 H 1.08996 * 109.47288 * 184.61133 * 15 13 12 26 26 H 1.08992 * 109.46856 * 304.61617 * 15 13 12 27 27 H 0.96697 * 113.99801 * 180.02562 * 16 15 13 28 28 H 1.09004 * 115.55467 * 279.38048 * 17 13 12 29 29 H 1.09003 * 117.49612 * 359.97438 * 18 17 13 30 30 H 1.09002 * 117.50235 * 145.02318 * 18 17 13 31 31 H 1.09004 * 117.49984 * 214.97509 * 19 17 13 32 32 H 1.08995 * 117.50073 * 359.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9433 0.8303 -2.6033 8 14 2.3213 -1.1199 -4.0080 9 1 3.1456 -2.2872 -3.6041 10 1 1.1660 -1.5862 -4.8162 11 1 3.1465 -0.1869 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 3.3782 -0.2522 1.5437 14 1 3.9344 -0.0416 0.6302 15 6 3.3024 1.0148 2.3982 16 8 2.6676 0.7129 3.6424 17 6 4.0881 -1.3559 2.3301 18 6 5.5179 -1.7103 1.9165 19 6 4.3701 -2.6721 1.6026 20 1 -0.3634 0.5684 0.8561 21 1 -0.3634 0.4571 -0.9204 22 1 -0.3633 -1.0257 0.0643 23 1 0.7092 1.1620 -3.4844 24 1 1.3891 -0.5606 1.9759 25 1 4.3094 1.3877 2.5851 26 1 2.7256 1.7746 1.8709 27 1 2.5849 1.4717 4.2360 28 1 3.8427 -1.4098 3.3908 29 1 5.9526 -1.1572 1.0838 30 1 6.2136 -1.9972 2.7051 31 1 4.3107 -3.5917 2.1848 32 1 4.0495 -2.7517 0.5640 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388398647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:14 Heat of formation + Delta-G solvation = -52.995570 kcal Electronic energy + Delta-G solvation = -13285.541122 eV Core-core repulsion = 11052.749093 eV Total energy + Delta-G solvation = -2232.792029 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.62653 -37.07160 -36.73324 -34.18052 -31.28782 -27.91970 -27.24884 -24.22391 -23.05137 -22.06670 -20.86962 -18.38629 -18.11182 -16.78585 -16.53157 -16.12385 -15.63122 -15.28706 -14.69229 -14.43336 -13.66852 -13.36938 -12.95257 -12.78438 -12.62822 -12.43384 -12.31160 -12.16528 -11.95256 -11.70923 -11.16763 -10.97956 -10.85002 -10.74354 -10.50050 -8.90274 -8.07925 -6.19354 1.39260 1.41676 1.53552 2.43291 2.96202 3.18241 3.46706 3.77859 3.91892 4.11774 4.33440 4.38584 4.49432 4.66939 4.76163 4.79121 4.87391 5.00248 5.01064 5.11892 5.18391 5.39900 5.48659 5.55127 5.72761 5.88186 6.35149 6.53593 6.90456 6.96113 7.05183 7.50374 8.96399 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033054 B = 0.011668 C = 0.009487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.897290 B = 2399.101090 C = 2950.780743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.505 4.505 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.675 5.675 13 C 0.121 3.879 14 H 0.062 0.938 15 C 0.060 3.940 16 O -0.575 6.575 17 C -0.133 4.133 18 C -0.170 4.170 19 C -0.172 4.172 20 H 0.026 0.974 21 H 0.064 0.936 22 H 0.032 0.968 23 H 0.260 0.740 24 H 0.329 0.671 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.393 0.607 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -0.683 9.503 11.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.108 3.892 3 H -0.013 1.013 4 C -0.544 4.544 5 H 0.068 0.932 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.305 5.305 13 C 0.011 3.989 14 H 0.081 0.919 15 C -0.020 4.020 16 O -0.383 6.383 17 C -0.152 4.152 18 C -0.207 4.207 19 C -0.209 4.209 20 H 0.045 0.955 21 H 0.083 0.917 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.147 0.853 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.242 0.758 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.249 -1.720 8.741 10.882 hybrid contribution -0.162 1.305 -0.552 1.426 sum 6.087 -0.415 8.189 10.212 Atomic orbital electron populations 1.21762 0.97992 0.99044 1.00370 1.18957 0.91792 0.90377 0.88047 1.01250 1.21456 1.30191 1.11715 0.91007 0.93192 1.25688 0.95659 0.95882 1.01743 1.70010 1.38183 1.24303 1.23802 0.85544 0.78125 0.78634 0.79550 1.19525 1.20647 1.20620 1.60519 1.02511 1.60936 1.06521 1.21125 0.91302 0.91516 0.94965 0.91943 1.22686 0.96691 0.97230 0.85387 1.86410 1.82483 1.40609 1.28770 1.22017 0.97483 0.96610 0.99045 1.23054 0.90855 1.03373 1.03448 1.22706 1.03094 0.94185 1.00927 0.95484 0.91689 0.94868 0.93060 0.85312 0.91799 0.95389 0.75780 0.87459 0.89641 0.86764 0.88092 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.01 71.98 0.65 -6.03 16 2 C 0.22 11.21 2.42 44.17 0.11 11.31 16 3 H -0.03 -1.69 7.13 -2.39 -0.02 -1.71 16 4 C -0.50 -28.56 8.43 25.60 0.22 -28.34 16 5 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 6 C 0.01 0.45 5.30 84.66 0.45 0.90 16 7 N -0.92 -53.69 11.30 21.45 0.24 -53.45 16 8 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 N -0.67 -29.79 6.00 -473.31 -2.84 -32.63 16 13 C 0.12 4.65 2.38 44.91 0.11 4.76 16 14 H 0.06 2.73 7.39 -2.38 -0.02 2.71 16 15 C 0.06 1.90 6.69 71.98 0.48 2.38 16 16 O -0.58 -16.10 12.08 -148.98 -1.80 -17.90 16 17 C -0.13 -4.36 5.17 -10.79 -0.06 -4.42 16 18 C -0.17 -4.77 10.18 30.60 0.31 -4.46 16 19 C -0.17 -5.64 10.21 30.60 0.31 -5.33 16 20 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.06 3.58 5.98 -2.39 -0.01 3.56 16 22 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.26 14.38 8.31 -92.70 -0.77 13.60 16 24 H 0.33 13.89 7.57 -89.69 -0.68 13.22 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 0.98 7.39 -2.39 -0.02 0.97 16 27 H 0.39 6.94 9.12 -74.06 -0.68 6.26 16 28 H 0.11 3.39 7.46 -2.38 -0.02 3.38 16 29 H 0.09 2.47 8.08 -2.39 -0.02 2.45 16 30 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -62.52 265.11 -0.04 -62.56 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.25 Total: 23.89 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 2.58 Total: -29.21 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.60 Total: -86.08 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.80 Total: -17.90 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -62.52 -0.04 -62.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388398647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.568 kcal (2) G-P(sol) polarization free energy of solvation -62.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds