Wall clock time and date at job start Mon Mar 30 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46625 * 2 1 4 4 C 1.50703 * 109.47419 * 239.99992 * 2 1 3 5 5 H 1.07999 * 119.99782 * 239.99709 * 4 2 1 6 6 C 1.37874 * 119.99857 * 59.99586 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99849 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47310 * 89.99996 * 8 6 4 10 10 H 1.48501 * 109.47283 * 210.00078 * 8 6 4 11 11 H 1.48496 * 109.47155 * 329.99936 * 8 6 4 12 12 N 1.46900 * 109.47555 * 119.99337 * 2 1 3 13 13 C 1.46898 * 111.00182 * 275.00714 * 12 2 1 14 14 H 1.08993 * 109.47084 * 324.99163 * 13 12 2 15 15 C 1.53006 * 109.47006 * 204.99462 * 13 12 2 16 16 O 1.42896 * 109.47373 * 295.00183 * 15 13 12 17 17 C 1.52999 * 109.47222 * 85.00080 * 13 12 2 18 18 C 1.53005 * 117.49583 * 248.62140 * 17 13 12 19 19 C 1.52999 * 60.00155 * 252.50915 * 18 17 13 20 20 H 1.08996 * 109.47006 * 299.99768 * 1 2 3 21 21 H 1.08999 * 109.47388 * 60.00273 * 1 2 3 22 22 H 1.09006 * 109.46625 * 179.97438 * 1 2 3 23 23 H 0.97005 * 119.99604 * 179.97438 * 7 6 4 24 24 H 1.00896 * 111.00379 * 151.04513 * 12 2 1 25 25 H 1.09007 * 109.46744 * 54.99841 * 15 13 12 26 26 H 1.08995 * 109.46794 * 175.00086 * 15 13 12 27 27 H 0.96699 * 114.00604 * 179.97438 * 16 15 13 28 28 H 1.09001 * 115.55220 * 34.32602 * 17 13 12 29 29 H 1.09005 * 117.50031 * 359.97438 * 18 17 13 30 30 H 1.08998 * 117.50125 * 145.02267 * 18 17 13 31 31 H 1.09002 * 117.50178 * 252.51705 * 19 18 17 32 32 H 1.08997 * 117.51868 * 107.47406 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 7 2.0198 -0.6923 1.1995 13 6 2.0825 0.2228 2.3469 14 1 2.3648 1.2178 2.0030 15 6 3.1222 -0.2850 3.3480 16 8 2.6934 -1.5373 3.8862 17 6 0.7118 0.2868 3.0236 18 6 -0.0675 1.5993 2.9181 19 6 0.5702 1.1932 4.2482 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7095 1.1617 -3.4844 24 1 2.9174 -1.1203 1.0288 25 1 4.0794 -0.4152 2.8430 26 1 3.2328 0.4388 4.1554 27 1 3.3060 -1.9195 4.5295 28 1 0.1394 -0.6408 3.0151 29 1 0.3965 2.4173 2.3669 30 1 -1.1528 1.5354 2.8400 31 1 -0.0956 0.8618 5.0452 32 1 1.4537 1.7433 4.5719 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388398650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:18 Heat of formation + Delta-G solvation = -26.746974 kcal Electronic energy + Delta-G solvation = -13263.985909 eV Core-core repulsion = 11032.332105 eV Total energy + Delta-G solvation = -2231.653805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.30783 -35.78008 -34.84827 -32.30911 -29.51646 -26.27095 -25.12179 -23.00973 -21.86246 -19.89330 -19.28701 -17.02576 -16.41344 -15.45889 -14.74260 -14.40755 -14.17879 -13.38525 -13.02149 -12.63469 -12.40806 -11.71601 -11.19214 -11.03511 -10.93501 -10.69590 -10.59925 -10.30595 -10.04004 -9.98973 -9.76253 -9.61463 -9.27073 -8.65797 -8.40276 -7.18044 -5.97299 -4.03557 3.32394 3.38513 3.41553 4.29524 4.43709 4.61872 5.07725 5.24553 5.32677 5.35498 5.48554 5.59497 5.87543 5.95923 6.03959 6.12729 6.29354 6.42600 6.51770 6.88532 7.05663 7.32840 7.37060 7.61920 7.83900 7.95166 7.99743 8.37500 8.49834 8.76756 9.08637 9.62085 11.08587 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046693 B = 0.009604 C = 0.008363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.519777 B = 2914.747383 C = 3347.196036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.674 5.674 13 C 0.117 3.883 14 H 0.047 0.953 15 C 0.081 3.919 16 O -0.552 6.552 17 C -0.103 4.103 18 C -0.181 4.181 19 C -0.192 4.192 20 H 0.021 0.979 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.260 0.740 24 H 0.331 0.669 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.365 0.635 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 0.393 10.960 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.306 5.306 13 C 0.006 3.994 14 H 0.064 0.936 15 C 0.003 3.997 16 O -0.355 6.355 17 C -0.122 4.122 18 C -0.218 4.218 19 C -0.229 4.229 20 H 0.040 0.960 21 H 0.093 0.907 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.209 0.791 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.333 0.383 10.560 10.651 hybrid contribution 1.513 0.102 -0.793 1.712 sum 2.847 0.484 9.767 10.185 Atomic orbital electron populations 1.21819 0.97772 0.99251 1.00014 1.19157 0.92948 0.91798 0.85459 0.98509 1.21311 1.31295 1.12412 0.90627 0.92337 1.24914 0.95134 0.95019 0.98970 1.69915 1.36768 1.22899 1.23289 0.86544 0.79189 0.79338 0.82571 1.20654 1.21341 1.20004 1.60570 1.32117 1.32595 1.05292 1.21166 0.92167 0.94764 0.91303 0.93582 1.22385 0.96261 0.85501 0.95584 1.86679 1.49985 1.36676 1.62111 1.22114 0.97609 0.94434 0.98015 1.22969 0.99448 0.99776 0.99655 1.22936 1.02722 1.05345 0.91932 0.96002 0.90651 0.95444 0.93044 0.85063 0.94216 0.94208 0.79065 0.87358 0.89250 0.89339 0.89566 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.95 37.16 0.33 -3.01 16 2 C 0.21 5.55 2.60 -68.86 -0.18 5.38 16 3 H 0.00 -0.07 7.43 -51.93 -0.39 -0.46 16 4 C -0.52 -14.56 8.59 -34.44 -0.30 -14.86 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.67 -15.01 6.11 -100.95 -0.62 -15.63 16 13 C 0.12 2.18 2.64 -67.71 -0.18 2.00 16 14 H 0.05 0.91 7.19 -51.93 -0.37 0.53 16 15 C 0.08 1.21 6.36 37.16 0.24 1.45 16 16 O -0.55 -8.29 13.10 -35.23 -0.46 -8.75 16 17 C -0.10 -1.83 3.49 -90.61 -0.32 -2.15 16 18 C -0.18 -2.99 8.38 -26.73 -0.22 -3.22 16 19 C -0.19 -2.79 9.79 -26.73 -0.26 -3.05 16 20 H 0.02 0.49 4.71 -51.93 -0.24 0.25 16 21 H 0.07 2.10 6.07 -51.93 -0.32 1.79 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.33 7.27 7.77 -39.29 -0.31 6.96 16 25 H 0.04 0.56 8.02 -51.93 -0.42 0.15 16 26 H 0.04 0.51 7.47 -51.93 -0.39 0.12 16 27 H 0.36 3.55 9.12 45.56 0.42 3.97 16 28 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 29 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.11 7.66 -51.93 -0.40 0.71 16 LS Contribution 259.48 15.07 3.91 3.91 Total: -1.00 -30.41 259.48 -6.60 -37.01 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.05 Total: 7.91 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.98 Total: -15.83 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.01 Total: -40.90 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.46 Total: -8.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.41 -6.60 -37.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388398650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.264 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds