Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47179 * 2 1 4 4 C 1.46900 * 111.00387 * 199.75499 * 3 2 1 5 5 C 1.50709 * 109.46821 * 66.04299 * 4 3 2 6 6 H 1.07997 * 119.99780 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99324 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99369 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00850 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47082 * 89.99670 * 9 7 5 11 11 H 1.48491 * 109.47677 * 210.00003 * 9 7 5 12 12 H 1.48502 * 109.46876 * 330.00175 * 9 7 5 13 13 C 1.46897 * 110.99915 * 75.80224 * 3 2 1 14 14 C 1.52999 * 109.47254 * 199.65168 * 13 3 2 15 15 C 1.52999 * 109.47540 * 174.88103 * 14 13 3 16 16 H 1.08996 * 115.71482 * 330.58651 * 15 14 13 17 17 C 1.52996 * 117.81856 * 183.55799 * 15 14 13 18 18 O 1.42901 * 57.63669 * 253.18367 * 17 15 14 19 19 H 1.09001 * 109.46758 * 294.84757 * 1 2 3 20 20 H 1.08994 * 109.47182 * 54.85049 * 1 2 3 21 21 H 1.09006 * 109.46727 * 174.85569 * 1 2 3 22 22 H 1.09000 * 109.47304 * 240.00280 * 2 1 3 23 23 H 1.09003 * 109.47451 * 120.00266 * 2 1 3 24 24 H 1.08991 * 109.47435 * 186.04727 * 4 3 2 25 25 H 1.08999 * 109.47186 * 306.04748 * 4 3 2 26 26 H 0.97007 * 119.99500 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47243 * 79.65007 * 13 3 2 28 28 H 1.09003 * 109.46895 * 319.64746 * 13 3 2 29 29 H 1.09004 * 109.47121 * 54.87871 * 14 13 3 30 30 H 1.09004 * 109.46850 * 294.88525 * 14 13 3 31 31 H 1.09001 * 117.77788 * 0.02562 * 17 15 14 32 32 H 1.09006 * 117.77235 * 146.34583 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4120 1.4512 -0.4635 5 6 3.4783 1.0474 -1.9140 6 1 2.5762 0.7699 -2.4390 7 6 4.6904 1.0334 -2.5709 8 7 4.7481 0.6815 -3.8368 9 14 6.2505 1.5141 -1.6631 10 1 6.8542 0.3073 -1.0429 11 1 7.2150 2.1141 -2.6195 12 1 5.9226 2.5030 -0.6048 13 6 1.8780 1.9934 1.3295 14 6 1.9208 3.5173 1.2002 15 6 1.6460 4.1530 2.5645 16 1 1.0091 3.5763 3.2353 17 6 1.5614 5.6788 2.6373 18 8 2.6790 4.9495 3.1482 19 1 -0.3633 0.4318 0.9326 20 1 -0.3633 0.5916 -0.8402 21 1 -0.3633 -1.0236 -0.0922 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 3.7839 2.4696 -0.3525 25 1 4.0253 0.7737 0.1305 26 1 5.6009 0.6720 -4.2991 27 1 2.6942 1.6601 1.9705 28 1 0.9261 1.6925 1.7672 29 1 1.1623 3.8430 0.4883 30 1 2.9055 3.8246 0.8478 31 1 1.7005 6.2400 1.7132 32 1 0.8682 6.1154 3.3564 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388406646.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -11.187968 kcal Electronic energy + Delta-G solvation = -12875.874822 eV Core-core repulsion = 10644.895706 eV Total energy + Delta-G solvation = -2230.979115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.20206 -37.20383 -32.64724 -31.84651 -29.88349 -27.23138 -25.72136 -23.19607 -22.14522 -21.03961 -19.65347 -16.94112 -16.37563 -15.61172 -15.18470 -14.60289 -14.28948 -13.83309 -13.48823 -13.01276 -12.62938 -12.39624 -11.80595 -11.68426 -11.28750 -11.15413 -10.81198 -10.71351 -10.44712 -10.25829 -10.10069 -9.79682 -9.77325 -9.22253 -8.56663 -7.39766 -6.04806 -4.01750 3.29337 3.37203 3.40934 3.53825 4.21773 4.43168 4.61094 4.89079 5.07635 5.22366 5.28891 5.50019 5.59055 5.67436 5.73032 5.82790 5.97972 6.01141 6.10749 6.29517 6.38814 6.54940 6.68620 6.73437 6.93813 7.00485 7.63368 7.93157 8.07935 8.66773 9.03949 9.57520 11.08222 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.010404 C = 0.008065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.223780 B = 2690.638746 C = 3470.921648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 N -0.528 5.528 4 C 0.159 3.841 5 C -0.509 4.509 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.056 3.944 14 C -0.104 4.104 15 C -0.002 4.002 16 H 0.121 0.879 17 C -0.044 4.044 18 O -0.362 6.362 19 H 0.042 0.958 20 H 0.062 0.938 21 H 0.048 0.952 22 H 0.091 0.909 23 H 0.018 0.982 24 H 0.030 0.970 25 H -0.018 1.018 26 H 0.263 0.737 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 4.632 11.174 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 N -0.252 5.252 4 C 0.033 3.967 5 C -0.547 4.547 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.700 3.300 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.073 4.073 14 C -0.142 4.142 15 C -0.060 4.060 16 H 0.139 0.861 17 C -0.119 4.119 18 O -0.283 6.283 19 H 0.061 0.939 20 H 0.081 0.919 21 H 0.067 0.933 22 H 0.109 0.891 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.000 1.000 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.616 4.876 10.848 14.123 hybrid contribution 1.606 -0.171 1.056 1.930 sum -6.010 4.705 11.904 14.141 Atomic orbital electron populations 1.21776 0.96337 1.00503 1.01374 1.22013 0.94523 0.89737 1.01155 1.61953 1.23820 1.17466 1.21941 1.20234 0.83811 0.96140 0.96499 1.21051 0.95387 1.44818 0.93442 0.90043 1.24894 0.98712 0.94947 0.94748 1.69901 1.25813 1.48663 1.09578 0.86893 0.83755 0.79307 0.80004 1.20370 1.21122 1.19149 1.22033 0.99920 0.93682 0.91670 1.21521 1.03996 0.95772 0.92894 1.23881 0.93666 0.90781 0.97626 0.86122 1.24330 0.93018 0.93132 1.01465 1.91670 1.30462 1.27725 1.78409 0.93926 0.91939 0.93284 0.89092 0.96417 0.95237 0.99995 0.92687 0.95639 0.91585 0.89108 0.90596 0.87252 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.96 37.16 0.37 -1.81 16 2 C 0.05 1.02 5.51 -3.82 -0.02 1.00 16 3 N -0.53 -10.92 4.36 -236.07 -1.03 -11.94 16 4 C 0.16 3.91 3.62 -4.97 -0.02 3.89 16 5 C -0.51 -14.48 8.79 -34.44 -0.30 -14.78 16 6 H 0.08 2.50 7.56 -52.49 -0.40 2.11 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 9 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 13 C 0.06 0.94 4.77 -3.83 -0.02 0.92 16 14 C -0.10 -1.61 5.66 -26.73 -0.15 -1.76 16 15 C 0.00 -0.03 6.61 -26.73 -0.18 -0.20 16 16 H 0.12 1.30 8.08 -51.93 -0.42 0.88 16 17 C -0.04 -0.49 11.41 37.16 0.42 -0.07 16 18 O -0.36 -5.80 14.48 -35.23 -0.51 -6.31 16 19 H 0.04 0.58 6.90 -51.93 -0.36 0.22 16 20 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.09 1.98 6.58 -51.93 -0.34 1.63 16 23 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 24 H 0.03 0.74 5.77 -51.93 -0.30 0.44 16 25 H -0.02 -0.44 7.55 -51.93 -0.39 -0.83 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.03 0.45 8.00 -51.93 -0.42 0.04 16 28 H 0.07 0.95 6.56 -51.93 -0.34 0.61 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.37 6.94 -51.93 -0.36 1.01 16 31 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 263.75 15.07 3.97 3.97 Total: -1.00 -31.52 263.75 -6.47 -37.99 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.02 Total: -3.15 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 0.01 Total: -10.91 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.25 Total: -38.84 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.51 Total: -6.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.52 -6.47 -37.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388406646.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.805 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds