Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47179 * 2 1 4 4 C 1.46900 * 111.00387 * 199.75499 * 3 2 1 5 5 C 1.50709 * 109.46821 * 66.04299 * 4 3 2 6 6 H 1.07997 * 119.99780 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99324 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99369 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00850 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47082 * 89.99670 * 9 7 5 11 11 H 1.48491 * 109.47677 * 210.00003 * 9 7 5 12 12 H 1.48502 * 109.46876 * 330.00175 * 9 7 5 13 13 C 1.46897 * 110.99915 * 75.80224 * 3 2 1 14 14 C 1.52999 * 109.47254 * 199.65168 * 13 3 2 15 15 C 1.52999 * 109.47540 * 174.88103 * 14 13 3 16 16 H 1.08996 * 115.71482 * 330.58651 * 15 14 13 17 17 C 1.52996 * 117.81856 * 183.55799 * 15 14 13 18 18 O 1.42901 * 57.63669 * 253.18367 * 17 15 14 19 19 H 1.09001 * 109.46758 * 294.84757 * 1 2 3 20 20 H 1.08994 * 109.47182 * 54.85049 * 1 2 3 21 21 H 1.09006 * 109.46727 * 174.85569 * 1 2 3 22 22 H 1.09000 * 109.47304 * 240.00280 * 2 1 3 23 23 H 1.09003 * 109.47451 * 120.00266 * 2 1 3 24 24 H 1.08991 * 109.47435 * 186.04727 * 4 3 2 25 25 H 1.08999 * 109.47186 * 306.04748 * 4 3 2 26 26 H 0.97007 * 119.99500 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47243 * 79.65007 * 13 3 2 28 28 H 1.09003 * 109.46895 * 319.64746 * 13 3 2 29 29 H 1.09004 * 109.47121 * 54.87871 * 14 13 3 30 30 H 1.09004 * 109.46850 * 294.88525 * 14 13 3 31 31 H 1.09001 * 117.77788 * 0.02562 * 17 15 14 32 32 H 1.09006 * 117.77235 * 146.34583 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4120 1.4512 -0.4635 5 6 3.4783 1.0474 -1.9140 6 1 2.5762 0.7699 -2.4390 7 6 4.6904 1.0334 -2.5709 8 7 4.7481 0.6815 -3.8368 9 14 6.2505 1.5141 -1.6631 10 1 6.8542 0.3073 -1.0429 11 1 7.2150 2.1141 -2.6195 12 1 5.9226 2.5030 -0.6048 13 6 1.8780 1.9934 1.3295 14 6 1.9208 3.5173 1.2002 15 6 1.6460 4.1530 2.5645 16 1 1.0091 3.5763 3.2353 17 6 1.5614 5.6788 2.6373 18 8 2.6790 4.9495 3.1482 19 1 -0.3633 0.4318 0.9326 20 1 -0.3633 0.5916 -0.8402 21 1 -0.3633 -1.0236 -0.0922 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 3.7839 2.4696 -0.3525 25 1 4.0253 0.7737 0.1305 26 1 5.6009 0.6720 -4.2991 27 1 2.6942 1.6601 1.9705 28 1 0.9261 1.6925 1.7672 29 1 1.1623 3.8430 0.4883 30 1 2.9055 3.8246 0.8478 31 1 1.7005 6.2400 1.7132 32 1 0.8682 6.1154 3.3564 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388406646.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -34.743816 kcal Electronic energy + Delta-G solvation = -12876.896280 eV Core-core repulsion = 10644.895706 eV Total energy + Delta-G solvation = -2232.000574 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.23251 -38.79493 -34.79917 -33.17527 -31.58697 -28.89365 -26.89317 -24.49794 -23.96226 -22.15005 -21.27496 -19.04580 -17.45011 -16.96089 -16.66818 -16.04150 -15.88537 -15.26222 -15.07940 -14.59721 -14.35337 -14.15056 -13.28665 -12.90663 -12.76700 -12.61881 -12.46905 -12.33052 -11.93985 -11.84300 -11.49980 -11.41661 -11.28620 -10.96521 -10.80556 -9.04750 -8.30922 -6.32909 1.29683 1.32007 1.42552 2.30720 2.58558 3.01278 3.11333 3.39110 3.87978 4.01787 4.14918 4.25891 4.37500 4.47655 4.57654 4.66464 4.73089 4.80099 4.81386 4.88157 5.00938 5.06116 5.16697 5.29140 5.32349 5.46713 5.55738 6.00833 6.40564 6.65684 6.73745 7.30488 8.85573 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.010404 C = 0.008065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.223780 B = 2690.638746 C = 3470.921648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.540 5.540 4 C 0.171 3.829 5 C -0.513 4.513 6 H 0.043 0.957 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.257 1.257 13 C 0.056 3.944 14 C -0.100 4.100 15 C -0.005 4.005 16 H 0.151 0.849 17 C -0.029 4.029 18 O -0.408 6.408 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.030 0.970 24 H 0.026 0.974 25 H -0.022 1.022 26 H 0.267 0.733 27 H 0.018 0.982 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 5.437 13.439 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.077 4.077 3 N -0.265 5.265 4 C 0.043 3.957 5 C -0.551 4.551 6 H 0.061 0.939 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.764 3.236 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.181 1.181 13 C -0.071 4.071 14 C -0.138 4.138 15 C -0.062 4.062 16 H 0.168 0.832 17 C -0.104 4.104 18 O -0.329 6.329 19 H 0.088 0.912 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.044 0.956 25 H -0.004 1.004 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.133 0.867 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.436 5.684 13.126 16.606 hybrid contribution 1.753 -0.433 0.312 1.833 sum -6.682 5.251 13.437 15.899 Atomic orbital electron populations 1.21685 0.93089 1.01868 1.02222 1.22038 0.97155 0.88680 0.99791 1.61904 1.21125 1.18729 1.24708 1.19950 0.86418 0.95327 0.93971 1.21269 0.94129 1.44289 0.95419 0.93881 1.25761 1.02364 0.94986 0.95518 1.70039 1.26951 1.50236 1.11354 0.85816 0.79356 0.79430 0.78954 1.19350 1.20324 1.18146 1.22162 1.01359 0.94250 0.89373 1.21438 1.02343 0.95044 0.94936 1.23928 0.93350 0.92327 0.96582 0.83191 1.24793 0.91346 0.91906 1.02319 1.91643 1.32563 1.29923 1.78782 0.91236 0.93203 0.91347 0.93029 0.95186 0.95627 1.00440 0.92401 0.96380 0.88145 0.88505 0.93872 0.86731 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.96 71.98 0.72 -3.02 16 2 C 0.05 1.92 5.51 86.30 0.48 2.39 16 3 N -0.54 -22.09 4.36 -900.79 -3.92 -26.02 16 4 C 0.17 8.43 3.62 85.56 0.31 8.74 16 5 C -0.51 -30.11 8.79 25.60 0.22 -29.89 16 6 H 0.04 2.79 7.56 -2.91 -0.02 2.77 16 7 C 0.01 0.67 5.47 84.65 0.46 1.13 16 8 N -0.94 -59.64 13.96 21.45 0.30 -59.34 16 9 Si 0.94 45.57 27.47 68.60 1.88 47.45 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.26 -11.98 6.54 99.48 0.65 -11.33 16 13 C 0.06 1.79 4.77 86.30 0.41 2.20 16 14 C -0.10 -2.93 5.66 30.59 0.17 -2.76 16 15 C -0.01 -0.12 6.61 30.59 0.20 0.08 16 16 H 0.15 2.59 8.08 -2.39 -0.02 2.57 16 17 C -0.03 -0.56 11.41 71.98 0.82 0.26 16 18 O -0.41 -12.27 14.48 -148.98 -2.16 -14.42 16 19 H 0.07 1.61 6.90 -2.39 -0.02 1.60 16 20 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 22 H 0.05 2.32 6.58 -2.39 -0.02 2.30 16 23 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 24 H 0.03 1.29 5.77 -2.39 -0.01 1.27 16 25 H -0.02 -1.10 7.55 -2.39 -0.02 -1.12 16 26 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 27 H 0.02 0.60 8.00 -2.39 -0.02 0.58 16 28 H 0.10 2.50 6.56 -2.39 -0.02 2.48 16 29 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.04 1.54 6.94 -2.38 -0.02 1.52 16 31 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.14 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -70.06 263.75 0.92 -69.14 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.02 Total: 4.04 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.80 Total: -20.85 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -3.62 Total: -85.36 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -2.16 Total: -14.42 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -70.06 0.92 -69.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388406646.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.396 kcal (2) G-P(sol) polarization free energy of solvation -70.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds