Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47698 * 2 1 4 4 C 1.50706 * 109.46961 * 119.99865 * 2 1 3 5 5 H 1.07999 * 119.99775 * 119.99908 * 4 2 1 6 6 C 1.37871 * 119.99989 * 299.99619 * 4 2 1 7 7 N 1.31519 * 120.00227 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00019 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47058 * 60.00245 * 8 6 4 10 10 H 1.48504 * 109.47511 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47084 * 300.00217 * 8 6 4 12 12 N 1.46903 * 109.47174 * 239.99419 * 2 1 3 13 13 O 1.46305 * 110.99655 * 90.00342 * 12 2 1 14 14 C 1.42893 * 114.00091 * 180.02562 * 13 12 2 15 15 C 1.52995 * 109.47340 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.53001 * 117.51964 * 116.28130 * 16 15 14 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 15 19 19 H 1.08993 * 109.47063 * 180.02562 * 1 2 3 20 20 H 1.09008 * 109.47035 * 300.00454 * 1 2 3 21 21 H 1.09000 * 109.46960 * 59.99853 * 1 2 3 22 22 H 0.96995 * 119.99838 * 179.97438 * 7 6 4 23 23 H 1.00897 * 111.00360 * 213.95458 * 12 2 1 24 24 H 1.08999 * 109.47252 * 59.99504 * 14 13 12 25 25 H 1.09005 * 109.46844 * 299.99815 * 14 13 12 26 26 H 1.08999 * 109.47504 * 59.99473 * 15 14 13 27 27 H 1.09005 * 109.46851 * 299.99627 * 15 14 13 28 28 H 1.09002 * 115.54973 * 330.57913 * 16 15 14 29 29 H 1.09001 * 117.49733 * 214.97413 * 17 16 15 30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 32 32 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8063 -1.1209 4.0082 10 1 1.8259 -0.4205 5.2205 11 1 1.8256 -2.5201 4.0078 12 7 2.0197 -0.6926 -1.1994 13 8 2.1945 0.2431 -2.3104 14 6 2.6696 -0.3650 -3.5131 15 6 2.8149 0.7012 -4.6007 16 6 3.3231 0.0500 -5.8887 17 6 2.4004 0.0822 -7.1088 18 6 3.6446 0.9716 -7.0670 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 0.7082 1.1610 3.4844 23 1 2.8768 -1.1885 -1.0060 24 1 1.9601 -1.1247 -3.8410 25 1 3.6385 -0.8286 -3.3276 26 1 3.5246 1.4607 -4.2726 27 1 1.8462 1.1652 -4.7864 28 1 3.9491 -0.8321 -5.7542 29 1 2.4194 -0.7789 -7.7769 30 1 1.4310 0.5669 -6.9939 31 1 3.4939 2.0417 -6.9247 32 1 4.4823 0.6956 -7.7076 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393348806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = 8.157891 kcal Electronic energy + Delta-G solvation = -12419.676539 eV Core-core repulsion = 10189.536323 eV Total energy + Delta-G solvation = -2230.140216 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.82462 -36.15684 -34.22771 -31.57054 -29.84194 -26.64674 -25.09986 -22.88934 -22.40417 -20.50761 -19.90090 -16.94385 -15.84804 -15.50236 -15.16980 -14.72674 -14.09615 -13.67470 -13.28643 -12.59910 -12.05196 -11.70062 -11.55987 -11.42628 -11.19800 -10.97147 -10.80764 -10.49274 -10.40522 -10.18542 -10.10876 -9.95537 -9.51334 -8.93880 -8.52457 -7.50201 -6.09996 -4.19340 3.27818 3.32049 3.33628 3.59966 3.78975 4.37445 4.73582 4.86379 4.88691 5.21786 5.25556 5.50056 5.53291 5.71279 5.75547 5.87827 5.98805 6.02609 6.26197 6.32360 6.40433 6.93159 7.17694 7.23274 7.40575 7.67810 7.88815 8.03795 8.21679 8.52101 8.87771 9.46265 10.96208 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.083875 B = 0.005573 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.750997 B = 5023.067347 C = 5163.736601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.202 3.798 3 H 0.023 0.977 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.497 5.497 13 O -0.276 6.276 14 C 0.068 3.932 15 C -0.086 4.086 16 C -0.147 4.147 17 C -0.181 4.181 18 C -0.182 4.182 19 H 0.030 0.970 20 H 0.083 0.917 21 H 0.013 0.987 22 H 0.264 0.736 23 H 0.322 0.678 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 -1.256 -13.283 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 H 0.041 0.959 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.170 5.170 13 O -0.280 6.280 14 C -0.010 4.010 15 C -0.125 4.125 16 C -0.165 4.165 17 C -0.218 4.218 18 C -0.219 4.219 19 H 0.050 0.950 20 H 0.102 0.898 21 H 0.032 0.968 22 H 0.074 0.926 23 H 0.136 0.864 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.056 -1.084 -13.339 13.728 hybrid contribution 1.239 -0.227 1.109 1.679 sum 4.296 -1.311 -12.230 13.028 Atomic orbital electron populations 1.21648 0.96740 0.99432 0.99961 1.19407 0.93349 0.94478 0.83321 0.95933 1.21139 1.32637 1.12986 0.90144 0.92082 1.24892 0.94809 0.94918 0.99034 1.69899 1.35866 1.22550 1.23901 0.86477 0.79091 0.79713 0.81644 1.20199 1.21098 1.20035 1.67225 1.30061 1.16453 1.03309 1.90767 1.88528 1.30809 1.17943 1.22154 0.97483 0.95665 0.85734 1.21072 1.01690 0.97873 0.91866 1.22194 1.03247 1.01420 0.89663 1.23050 0.95171 1.02343 1.01227 1.22962 0.99498 0.97641 1.01774 0.95034 0.89806 0.96833 0.92580 0.86362 0.93334 0.94450 0.91137 0.91101 0.87743 0.88995 0.88663 0.88783 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.30 37.16 0.35 -2.78 16 2 C 0.20 5.45 2.95 -68.86 -0.20 5.25 16 3 H 0.02 0.68 8.05 -51.93 -0.42 0.26 16 4 C -0.53 -14.73 8.59 -34.44 -0.30 -15.03 16 5 H 0.06 1.64 7.54 -52.49 -0.40 1.24 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.50 -11.73 7.15 -5.65 -0.04 -11.77 16 13 O -0.28 -6.08 11.22 -13.93 -0.16 -6.24 16 14 C 0.07 1.14 6.35 37.16 0.24 1.37 16 15 C -0.09 -1.19 5.87 -26.73 -0.16 -1.35 16 16 C -0.15 -1.65 5.73 -90.61 -0.52 -2.17 16 17 C -0.18 -1.80 10.18 -26.73 -0.27 -2.07 16 18 C -0.18 -1.75 10.25 -26.73 -0.27 -2.03 16 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 20 H 0.08 2.32 6.07 -51.92 -0.32 2.01 16 21 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.32 7.12 8.29 -39.29 -0.33 6.79 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 28 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 272.44 15.07 4.11 4.11 Total: -1.00 -29.28 272.44 -6.94 -36.22 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.22 Total: 3.42 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.23 Total: -17.06 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.59 Total: -36.54 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.16 Total: -6.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.28 -6.94 -36.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393348806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.377 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds