Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47698 * 2 1 4 4 C 1.50706 * 109.46961 * 119.99865 * 2 1 3 5 5 H 1.07999 * 119.99775 * 119.99908 * 4 2 1 6 6 C 1.37871 * 119.99989 * 299.99619 * 4 2 1 7 7 N 1.31519 * 120.00227 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00019 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47058 * 60.00245 * 8 6 4 10 10 H 1.48504 * 109.47511 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47084 * 300.00217 * 8 6 4 12 12 N 1.46903 * 109.47174 * 239.99419 * 2 1 3 13 13 O 1.46305 * 110.99655 * 90.00342 * 12 2 1 14 14 C 1.42893 * 114.00091 * 180.02562 * 13 12 2 15 15 C 1.52995 * 109.47340 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47289 * 180.02562 * 15 14 13 17 17 C 1.53001 * 117.51964 * 116.28130 * 16 15 14 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 15 19 19 H 1.08993 * 109.47063 * 180.02562 * 1 2 3 20 20 H 1.09008 * 109.47035 * 300.00454 * 1 2 3 21 21 H 1.09000 * 109.46960 * 59.99853 * 1 2 3 22 22 H 0.96995 * 119.99838 * 179.97438 * 7 6 4 23 23 H 1.00897 * 111.00360 * 213.95458 * 12 2 1 24 24 H 1.08999 * 109.47252 * 59.99504 * 14 13 12 25 25 H 1.09005 * 109.46844 * 299.99815 * 14 13 12 26 26 H 1.08999 * 109.47504 * 59.99473 * 15 14 13 27 27 H 1.09005 * 109.46851 * 299.99627 * 15 14 13 28 28 H 1.09002 * 115.54973 * 330.57913 * 16 15 14 29 29 H 1.09001 * 117.49733 * 214.97413 * 17 16 15 30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 32 32 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.8063 -1.1209 4.0082 10 1 1.8259 -0.4205 5.2205 11 1 1.8256 -2.5201 4.0078 12 7 2.0197 -0.6926 -1.1994 13 8 2.1945 0.2431 -2.3104 14 6 2.6696 -0.3650 -3.5131 15 6 2.8149 0.7012 -4.6007 16 6 3.3231 0.0500 -5.8887 17 6 2.4004 0.0822 -7.1088 18 6 3.6446 0.9716 -7.0670 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 0.7082 1.1610 3.4844 23 1 2.8768 -1.1885 -1.0060 24 1 1.9601 -1.1247 -3.8410 25 1 3.6385 -0.8286 -3.3276 26 1 3.5246 1.4607 -4.2726 27 1 1.8462 1.1652 -4.7864 28 1 3.9491 -0.8321 -5.7542 29 1 2.4194 -0.7789 -7.7769 30 1 1.4310 0.5669 -6.9939 31 1 3.4939 2.0417 -6.9247 32 1 4.4823 0.6956 -7.7076 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393348806.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = -9.510325 kcal Electronic energy + Delta-G solvation = -12420.442690 eV Core-core repulsion = 10189.536323 eV Total energy + Delta-G solvation = -2230.906367 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.85794 -37.78874 -36.13952 -33.48033 -31.30665 -28.57336 -27.22836 -24.13570 -23.18115 -22.14983 -21.29959 -18.93546 -17.41062 -17.03651 -16.72730 -16.23473 -15.51294 -15.10867 -14.81593 -14.48193 -13.51518 -13.43994 -13.10506 -12.80792 -12.58333 -12.50642 -12.33797 -12.26533 -12.18694 -12.10155 -11.26534 -11.18944 -11.01988 -10.76917 -10.59726 -9.41573 -8.20131 -6.38541 1.43168 1.46325 1.53965 1.98413 2.43592 2.91894 3.09377 3.76400 3.98601 4.03113 4.20375 4.35125 4.41322 4.57183 4.73392 4.78310 4.81141 4.96266 5.05067 5.06722 5.10035 5.13219 5.29017 5.34344 5.40247 5.55295 5.85686 5.96990 6.11640 6.61533 6.79060 7.31919 8.86199 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.083875 B = 0.005573 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.750997 B = 5023.067347 C = 5163.736601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.206 3.794 3 H -0.017 1.017 4 C -0.552 4.552 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.975 3.025 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.267 1.267 12 N -0.496 5.496 13 O -0.293 6.293 14 C 0.062 3.938 15 C -0.078 4.078 16 C -0.160 4.160 17 C -0.179 4.179 18 C -0.172 4.172 19 H 0.034 0.966 20 H 0.065 0.935 21 H 0.019 0.981 22 H 0.267 0.733 23 H 0.329 0.671 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 -2.218 -13.889 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 H 0.000 1.000 4 C -0.590 4.590 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.192 1.192 12 N -0.168 5.168 13 O -0.301 6.301 14 C -0.016 4.016 15 C -0.117 4.117 16 C -0.179 4.179 17 C -0.216 4.216 18 C -0.209 4.209 19 H 0.053 0.947 20 H 0.084 0.916 21 H 0.038 0.962 22 H 0.076 0.924 23 H 0.144 0.856 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.869 -2.062 -13.964 14.636 hybrid contribution 0.995 0.105 1.179 1.546 sum 4.864 -1.956 -12.785 13.818 Atomic orbital electron populations 1.21487 0.96495 0.99343 0.99337 1.19232 0.93663 0.92516 0.84881 0.99958 1.21447 1.33201 1.13475 0.90885 0.91402 1.25807 0.94734 0.95541 1.02232 1.70031 1.36650 1.23798 1.24795 0.85353 0.78724 0.78615 0.77387 1.19376 1.20655 1.19161 1.67025 1.30735 1.16364 1.02660 1.90748 1.89132 1.31228 1.18965 1.22481 0.97963 0.96771 0.84364 1.21011 1.01430 0.97055 0.92201 1.22117 1.04590 1.02321 0.88833 1.23142 0.95109 1.02960 1.00370 1.23060 0.99871 0.97495 1.00460 0.94662 0.91636 0.96180 0.92367 0.85584 0.93014 0.93101 0.91586 0.91752 0.86988 0.87511 0.88984 0.88738 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 9.30 71.98 0.67 -5.07 16 2 C 0.21 11.27 2.95 44.17 0.13 11.40 16 3 H -0.02 -1.06 8.05 -2.39 -0.02 -1.08 16 4 C -0.55 -30.69 8.59 25.60 0.22 -30.47 16 5 H 0.07 3.59 7.54 -2.91 -0.02 3.57 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -52.98 11.32 21.45 0.24 -52.74 16 8 Si 0.98 42.79 29.54 68.60 2.03 44.81 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.50 -23.44 7.15 -171.80 -1.23 -24.67 16 13 O -0.29 -12.98 11.22 -50.17 -0.56 -13.54 16 14 C 0.06 2.01 6.35 71.98 0.46 2.47 16 15 C -0.08 -2.09 5.87 30.59 0.18 -1.91 16 16 C -0.16 -3.30 5.73 -10.79 -0.06 -3.36 16 17 C -0.18 -3.17 10.18 30.59 0.31 -2.86 16 18 C -0.17 -2.91 10.25 30.60 0.31 -2.59 16 19 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.06 3.70 6.07 -2.38 -0.01 3.69 16 21 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 23 H 0.33 14.48 8.29 -89.70 -0.74 13.73 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.78 7.88 -2.38 -0.02 1.77 16 28 H 0.11 2.14 8.08 -2.39 -0.02 2.12 16 29 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.69 8.03 -2.39 -0.02 1.67 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -61.76 272.44 3.48 -58.27 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.34 Total: 18.86 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 2.67 Total: -31.00 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -0.98 Total: -77.41 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.56 Total: -13.54 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -61.76 3.48 -58.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393348806.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.761 kcal (2) G-P(sol) polarization free energy of solvation -61.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds