Wall clock time and date at job start Mon Mar 30 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00635 * 2 1 4 4 C 1.53779 * 113.69107 * 110.93297 * 3 2 1 5 5 C 1.53786 * 87.07875 * 89.12958 * 4 3 2 6 6 N 1.46902 * 113.61223 * 139.97878 * 5 4 3 7 7 C 1.46902 * 110.99747 * 73.46387 * 6 5 4 8 8 C 1.46899 * 110.99882 * 197.41551 * 6 5 4 9 9 C 1.50703 * 109.46670 * 170.00079 * 8 6 5 10 10 H 1.07998 * 120.00585 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99727 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99943 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00130 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47082 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47609 * 120.00298 * 13 11 9 16 16 H 1.48504 * 109.47221 * 240.00649 * 13 11 9 17 17 C 1.53776 * 113.61716 * 208.47289 * 3 2 1 18 18 H 1.08998 * 109.46986 * 300.00014 * 1 2 3 19 19 H 1.09004 * 109.46826 * 59.99718 * 1 2 3 20 20 H 1.08993 * 109.47460 * 179.97438 * 1 2 3 21 21 H 1.09004 * 112.84659 * 339.67061 * 3 2 1 22 22 H 1.08992 * 113.61619 * 203.67893 * 4 3 2 23 23 H 1.08999 * 113.61038 * 334.58510 * 4 3 2 24 24 H 1.08998 * 113.69413 * 270.87411 * 5 4 3 25 25 H 1.08999 * 109.47197 * 65.41356 * 7 6 5 26 26 H 1.08999 * 109.47194 * 185.41668 * 7 6 5 27 27 H 1.09008 * 109.46972 * 305.41224 * 7 6 5 28 28 H 1.08999 * 109.46971 * 289.99773 * 8 6 5 29 29 H 1.08998 * 109.46986 * 50.00563 * 8 6 5 30 30 H 0.97003 * 120.00118 * 179.97438 * 12 11 9 31 31 H 1.08998 * 113.61855 * 25.34753 * 17 3 2 32 32 H 1.09001 * 113.61480 * 156.25493 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7213 1.6652 1.3153 5 6 3.9897 1.0424 0.7083 6 7 5.2157 1.7939 1.0086 7 6 5.6170 1.6084 2.4095 8 6 6.3022 1.4153 0.0952 9 6 7.4572 2.3680 0.2665 10 1 7.3910 3.1739 0.9825 11 6 8.5990 2.2103 -0.4902 12 7 8.6798 1.2287 -1.3618 13 14 10.0309 3.3908 -0.2775 14 1 9.6911 4.3998 0.7577 15 1 11.2374 2.6347 0.1446 16 1 10.3025 4.0769 -1.5663 17 6 3.3924 1.3643 -0.6717 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.3220 2.0752 -0.3490 22 1 2.8018 2.7382 1.4888 23 1 2.3397 1.1229 2.1803 24 1 4.0894 -0.0255 0.9026 25 1 5.8930 0.5667 2.5736 26 1 6.4702 2.2495 2.6310 27 1 4.7855 1.8713 3.0635 28 1 6.6310 0.4012 0.3223 29 1 5.9442 1.4595 -0.9333 30 1 9.4829 1.1179 -1.8944 31 1 3.5526 0.5792 -1.4107 32 1 3.6563 2.3552 -1.0414 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393356539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:52 Heat of formation + Delta-G solvation = -41.804037 kcal Electronic energy + Delta-G solvation = -12981.301508 eV Core-core repulsion = 10748.994780 eV Total energy + Delta-G solvation = -2232.306728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.66547 -37.96445 -35.67778 -34.18542 -29.38598 -27.73183 -27.21278 -26.12329 -24.78814 -22.44553 -20.29451 -18.53032 -17.53101 -16.79717 -16.61079 -16.13389 -15.97859 -15.27985 -15.04993 -14.34227 -14.00954 -13.41699 -13.28503 -13.09974 -12.88318 -12.63340 -12.54573 -12.40465 -12.13202 -11.91126 -11.47266 -11.30553 -10.96367 -10.62355 -10.41701 -9.04985 -8.19973 -6.30609 1.41424 1.42053 1.56100 2.40990 2.77291 3.12449 3.39661 3.64197 3.78656 3.91369 4.21899 4.35825 4.55172 4.60659 4.61939 4.71611 4.85989 4.87412 4.91390 5.01849 5.05239 5.16532 5.19107 5.32809 5.37556 5.67254 6.07011 6.32955 6.35166 6.67882 6.86720 7.39434 8.91799 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069038 B = 0.007343 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.474316 B = 3812.202439 C = 4015.369086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.077 3.923 4 C -0.127 4.127 5 C 0.046 3.954 6 N -0.534 5.534 7 C 0.042 3.958 8 C 0.207 3.793 9 C -0.523 4.523 10 H 0.065 0.935 11 C -0.001 4.001 12 N -0.938 5.938 13 Si 0.973 3.027 14 H -0.261 1.261 15 H -0.279 1.279 16 H -0.277 1.277 17 C -0.130 4.130 18 H 0.054 0.946 19 H 0.053 0.947 20 H 0.095 0.905 21 H 0.103 0.897 22 H 0.105 0.895 23 H 0.076 0.924 24 H 0.035 0.965 25 H 0.001 0.999 26 H 0.059 0.941 27 H 0.080 0.920 28 H -0.049 1.049 29 H 0.009 0.991 30 H 0.264 0.736 31 H 0.052 0.948 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 1.235 4.240 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.019 3.981 4 C -0.165 4.165 5 C -0.063 4.063 6 N -0.258 5.258 7 C -0.106 4.106 8 C 0.081 3.919 9 C -0.561 4.561 10 H 0.083 0.917 11 C -0.199 4.199 12 N -0.578 5.578 13 Si 0.797 3.203 14 H -0.185 1.185 15 H -0.205 1.205 16 H -0.203 1.203 17 C -0.168 4.168 18 H 0.073 0.927 19 H 0.072 0.928 20 H 0.114 0.886 21 H 0.121 0.879 22 H 0.123 0.877 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.020 0.980 26 H 0.078 0.922 27 H 0.099 0.901 28 H -0.031 1.031 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.227 1.486 4.052 14.867 hybrid contribution 1.145 -0.659 -0.132 1.327 sum -13.082 0.827 3.920 13.682 Atomic orbital electron populations 1.23016 0.79127 1.03811 1.01167 1.87871 1.21866 1.27388 1.94695 1.22910 0.93652 0.85259 0.96289 1.23406 0.93477 1.02085 0.97506 1.23132 0.90564 0.94506 0.98095 1.62355 1.04473 1.55101 1.03862 1.22157 1.00958 0.98068 0.89455 1.19363 0.88775 0.92335 0.91476 1.21530 0.99581 1.13355 1.21634 0.91684 1.25975 1.01730 0.97468 0.94732 1.70116 1.29434 1.32896 1.25386 0.85281 0.78119 0.78582 0.78299 1.18512 1.20499 1.20294 1.23214 0.95239 1.02232 0.96138 0.92693 0.92794 0.88643 0.87875 0.87667 0.90535 0.94673 0.98009 0.92248 0.90122 1.03132 0.97309 0.92713 0.92879 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.85 113.37 1.23 1.68 16 2 O -0.40 -11.28 10.64 -148.98 -1.58 -12.87 16 3 C 0.08 2.12 4.36 31.12 0.14 2.26 16 4 C -0.13 -3.66 7.09 31.12 0.22 -3.44 16 5 C 0.05 1.78 3.11 45.44 0.14 1.92 16 6 N -0.53 -24.24 4.70 -898.48 -4.22 -28.46 16 7 C 0.04 1.70 9.29 127.69 1.19 2.89 16 8 C 0.21 11.60 4.64 85.56 0.40 11.99 16 9 C -0.52 -30.52 8.54 25.60 0.22 -30.30 16 10 H 0.06 3.70 7.10 -2.91 -0.02 3.68 16 11 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 12 N -0.94 -58.11 13.29 21.45 0.28 -57.82 16 13 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 C -0.13 -4.65 6.60 31.12 0.21 -4.44 16 18 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 19 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 20 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.10 2.21 7.88 -2.38 -0.02 2.19 16 22 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.00 0.06 8.13 -2.39 -0.02 0.04 16 26 H 0.06 2.53 6.90 -2.39 -0.02 2.51 16 27 H 0.08 2.65 7.64 -2.38 -0.02 2.63 16 28 H -0.05 -3.04 8.11 -2.39 -0.02 -3.06 16 29 H 0.01 0.53 7.19 -2.39 -0.02 0.51 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -67.53 265.81 1.77 -65.76 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.06 Total: 3.40 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.20 Total: -17.07 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.93 Total: -86.29 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.58 Total: -12.87 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.53 1.77 -65.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393356539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.952 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds