Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.53003 * 112.93961 * 48.43168 * 4 3 2 6 6 C 1.53930 * 113.73197 * 276.72335 * 4 3 2 7 7 N 1.47958 * 86.18313 * 221.92298 * 6 4 3 8 8 C 1.46898 * 111.00155 * 137.58255 * 7 6 4 9 9 C 1.50706 * 109.47077 * 70.64376 * 8 7 6 10 10 H 1.07995 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99840 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00128 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99619 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47409 * 60.00418 * 13 11 9 15 15 H 1.48504 * 109.46776 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47501 * 299.99961 * 13 11 9 17 17 C 1.47959 * 90.76303 * 24.68847 * 7 6 4 18 18 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 20 20 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 21 21 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 22 22 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 23 23 H 1.08997 * 109.46868 * 69.66940 * 5 4 3 24 24 H 1.09002 * 109.46894 * 189.66741 * 5 4 3 25 25 H 1.08998 * 109.46850 * 309.66662 * 5 4 3 26 26 H 1.09003 * 113.76505 * 336.24140 * 6 4 3 27 27 H 1.09005 * 113.76000 * 107.60631 * 6 4 3 28 28 H 1.09007 * 109.47130 * 190.64338 * 8 7 6 29 29 H 1.08994 * 109.47152 * 310.64199 * 8 7 6 30 30 H 0.97006 * 120.00266 * 179.97438 * 12 11 9 31 31 H 1.08993 * 113.76433 * 220.99075 * 17 7 6 32 32 H 1.09005 * 113.75935 * 89.62442 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0995 0.5752 -1.0532 6 6 4.0608 1.3449 1.4003 7 7 4.9415 2.4598 0.9874 8 6 5.0946 3.4391 2.0716 9 6 5.9312 2.8418 3.1737 10 1 6.3108 1.8353 3.0784 11 6 6.2119 3.5804 4.3035 12 7 5.7492 4.8059 4.4198 13 14 7.2483 2.8397 5.6698 14 1 8.5860 2.4783 5.1361 15 1 7.4031 3.8298 6.7658 16 1 6.5791 1.6221 6.1943 17 6 3.9371 2.9140 0.0005 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5137 0.8900 23 1 3.8812 0.9656 -2.0471 24 1 5.1777 0.5713 -0.8931 25 1 3.7161 -0.4417 -0.9699 26 1 3.3790 1.6011 2.2113 27 1 4.5895 0.4065 1.5680 28 1 5.5852 4.3333 1.6869 29 1 4.1126 3.7036 2.4636 30 1 5.9464 5.3255 5.2149 31 1 4.3668 3.2293 -0.9502 32 1 3.2190 3.6290 0.4020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399938542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = -18.275190 kcal Electronic energy + Delta-G solvation = -13067.665743 eV Core-core repulsion = 10836.379303 eV Total energy + Delta-G solvation = -2231.286440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.77770 -36.57848 -32.93889 -31.19075 -29.92527 -27.42960 -25.57191 -24.31776 -22.51534 -20.98521 -18.67411 -16.60615 -16.26274 -15.41094 -15.01961 -14.41578 -14.28652 -13.74809 -12.86366 -12.71310 -12.46442 -12.29523 -11.83704 -11.67775 -11.56616 -11.42281 -10.96401 -10.89143 -10.64408 -10.37814 -10.07142 -9.67269 -9.18039 -9.02501 -8.47520 -7.77640 -6.03487 -4.05489 3.33229 3.36949 3.40048 3.88796 4.43040 4.77285 4.89951 5.12345 5.24109 5.31957 5.36717 5.45605 5.58366 5.68445 5.92263 5.96827 6.09444 6.13079 6.16924 6.24646 6.32088 6.45728 6.59967 6.71712 7.25925 7.59281 7.64743 7.89559 8.13397 8.43381 9.01304 9.58657 11.07828 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050172 B = 0.007837 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.945021 B = 3571.721249 C = 3681.427196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.377 6.377 4 C 0.073 3.927 5 C -0.151 4.151 6 C 0.004 3.996 7 N -0.472 5.472 8 C 0.162 3.838 9 C -0.511 4.511 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.016 3.984 18 H 0.066 0.934 19 H 0.061 0.939 20 H 0.059 0.941 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.000 1.000 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 -8.579 -8.524 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.296 6.296 4 C 0.034 3.966 5 C -0.208 4.208 6 C -0.126 4.126 7 N -0.197 5.197 8 C 0.036 3.964 9 C -0.549 4.549 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.113 4.113 18 H 0.085 0.915 19 H 0.081 0.919 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.018 0.982 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.436 -8.370 -8.589 13.610 hybrid contribution -0.071 -0.206 1.244 1.263 sum -6.507 -8.576 -7.344 13.032 Atomic orbital electron populations 1.21742 0.94324 1.01755 1.02915 1.22385 0.94877 0.85019 0.99988 1.87964 1.21110 1.25694 1.94822 1.23673 0.79593 0.97449 0.95924 1.21977 1.02275 0.98620 0.97962 1.24265 0.95194 0.97802 0.95291 1.68519 1.31114 1.07943 1.12095 1.20204 0.96337 0.91437 0.88416 1.21049 1.32021 1.00590 1.01266 0.92093 1.24993 0.96212 0.94880 0.98459 1.69950 1.45606 1.09385 1.28765 0.86542 0.80803 0.78729 0.81228 1.20119 1.21272 1.20290 1.24042 0.94374 0.93794 0.99079 0.91529 0.91943 0.92152 0.93397 0.93490 0.92172 0.90064 0.92454 0.91003 0.90590 0.94874 0.98209 0.92807 0.89871 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 37.16 0.38 -1.25 16 2 C 0.05 0.71 6.00 37.16 0.22 0.93 16 3 O -0.38 -6.36 10.31 -35.23 -0.36 -6.72 16 4 C 0.07 1.26 1.43 -89.69 -0.13 1.14 16 5 C -0.15 -2.15 8.80 37.16 0.33 -1.82 16 6 C 0.00 0.08 6.79 -2.77 -0.02 0.06 16 7 N -0.47 -10.67 6.11 -239.64 -1.46 -12.14 16 8 C 0.16 4.39 4.58 -4.97 -0.02 4.37 16 9 C -0.51 -14.77 8.84 -34.44 -0.30 -15.07 16 10 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 13 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.02 0.31 7.38 -2.77 -0.02 0.29 16 18 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 19 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.05 0.56 6.40 -51.93 -0.33 0.23 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 1.21 8.00 -51.93 -0.42 0.80 16 25 H 0.06 0.71 6.27 -51.93 -0.33 0.38 16 26 H 0.07 1.58 7.78 -51.93 -0.40 1.18 16 27 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 28 H 0.03 0.96 8.14 -51.92 -0.42 0.53 16 29 H 0.00 0.00 7.69 -51.93 -0.40 -0.40 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 31 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 32 H 0.07 1.40 7.79 -51.93 -0.40 1.00 16 LS Contribution 265.22 15.07 4.00 4.00 Total: -1.00 -30.73 265.22 -6.98 -37.71 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.20 Total: -3.53 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 0.34 Total: -9.83 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: -0.73 Total: -38.59 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.36 Total: -6.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.73 -6.98 -37.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399938542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.438 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds