Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.53003 * 112.93961 * 48.43168 * 4 3 2 6 6 C 1.53930 * 113.73197 * 276.72335 * 4 3 2 7 7 N 1.47958 * 86.18313 * 221.92298 * 6 4 3 8 8 C 1.46898 * 111.00155 * 137.58255 * 7 6 4 9 9 C 1.50706 * 109.47077 * 70.64376 * 8 7 6 10 10 H 1.07995 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99840 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00128 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99619 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47409 * 60.00418 * 13 11 9 15 15 H 1.48504 * 109.46776 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47501 * 299.99961 * 13 11 9 17 17 C 1.47959 * 90.76303 * 24.68847 * 7 6 4 18 18 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 20 20 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 21 21 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 22 22 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 23 23 H 1.08997 * 109.46868 * 69.66940 * 5 4 3 24 24 H 1.09002 * 109.46894 * 189.66741 * 5 4 3 25 25 H 1.08998 * 109.46850 * 309.66662 * 5 4 3 26 26 H 1.09003 * 113.76505 * 336.24140 * 6 4 3 27 27 H 1.09005 * 113.76000 * 107.60631 * 6 4 3 28 28 H 1.09007 * 109.47130 * 190.64338 * 8 7 6 29 29 H 1.08994 * 109.47152 * 310.64199 * 8 7 6 30 30 H 0.97006 * 120.00266 * 179.97438 * 12 11 9 31 31 H 1.08993 * 113.76433 * 220.99075 * 17 7 6 32 32 H 1.09005 * 113.75935 * 89.62442 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0995 0.5752 -1.0532 6 6 4.0608 1.3449 1.4003 7 7 4.9415 2.4598 0.9874 8 6 5.0946 3.4391 2.0716 9 6 5.9312 2.8418 3.1737 10 1 6.3108 1.8353 3.0784 11 6 6.2119 3.5804 4.3035 12 7 5.7492 4.8059 4.4198 13 14 7.2483 2.8397 5.6698 14 1 8.5860 2.4783 5.1361 15 1 7.4031 3.8298 6.7658 16 1 6.5791 1.6221 6.1943 17 6 3.9371 2.9140 0.0005 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5137 0.8900 23 1 3.8812 0.9656 -2.0471 24 1 5.1777 0.5713 -0.8931 25 1 3.7161 -0.4417 -0.9699 26 1 3.3790 1.6011 2.2113 27 1 4.5895 0.4065 1.5680 28 1 5.5852 4.3333 1.6869 29 1 4.1126 3.7036 2.4636 30 1 5.9464 5.3255 5.2149 31 1 4.3668 3.2293 -0.9502 32 1 3.2190 3.6290 0.4020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399938542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = -40.862886 kcal Electronic energy + Delta-G solvation = -13068.645219 eV Core-core repulsion = 10836.379303 eV Total energy + Delta-G solvation = -2232.265916 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.31612 -37.98309 -35.07157 -32.52461 -31.27794 -29.18997 -27.19992 -26.13419 -23.76966 -22.71088 -20.13936 -18.64518 -17.92049 -16.66880 -16.62041 -16.26250 -15.72123 -15.24556 -14.53278 -14.20139 -14.08292 -13.48763 -13.40282 -13.09634 -13.00349 -12.76973 -12.69991 -12.50408 -12.31989 -12.05604 -11.63508 -11.33450 -11.20538 -10.67881 -10.39333 -9.65812 -8.26382 -6.38079 1.37948 1.41965 1.50158 2.36305 2.63884 3.06241 3.22619 3.43060 3.91094 4.13592 4.20941 4.40399 4.49630 4.51368 4.58106 4.64752 4.73299 4.87693 4.89974 4.91975 5.02678 5.07021 5.12678 5.24853 5.30930 5.46830 5.72280 6.06252 6.32067 6.37188 6.76156 7.31877 8.85587 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050172 B = 0.007837 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.945021 B = 3571.721249 C = 3681.427196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.396 6.396 4 C 0.096 3.904 5 C -0.145 4.145 6 C -0.002 4.002 7 N -0.481 5.481 8 C 0.177 3.823 9 C -0.532 4.532 10 H 0.062 0.938 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.974 3.026 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.267 1.267 17 C 0.009 3.991 18 H 0.094 0.906 19 H 0.049 0.951 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.005 0.995 29 H -0.031 1.031 30 H 0.266 0.734 31 H 0.106 0.894 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 -10.559 -9.162 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.315 6.315 4 C 0.056 3.944 5 C -0.202 4.202 6 C -0.131 4.131 7 N -0.204 5.204 8 C 0.050 3.950 9 C -0.570 4.570 10 H 0.080 0.920 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.192 1.192 17 C -0.120 4.120 18 H 0.113 0.887 19 H 0.068 0.932 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.023 0.977 29 H -0.013 1.013 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.340 -10.367 -9.247 15.270 hybrid contribution -0.184 0.410 1.401 1.471 sum -6.524 -9.956 -7.846 14.256 Atomic orbital electron populations 1.21767 0.92696 1.03478 1.02483 1.22711 0.96282 0.83261 1.00974 1.87945 1.20402 1.28346 1.94833 1.23400 0.80391 0.96113 0.94538 1.21956 1.01459 0.99223 0.97526 1.24293 0.94862 0.97103 0.96887 1.68418 1.33170 1.07682 1.11162 1.19859 0.94108 0.91563 0.89440 1.21361 1.32555 1.00793 1.02261 0.92023 1.25988 0.97346 0.95209 1.01178 1.70085 1.46735 1.10855 1.29728 0.85368 0.79064 0.78127 0.77662 1.19053 1.20523 1.19181 1.24134 0.93587 0.95414 0.98849 0.88721 0.93177 0.91810 0.91100 0.93683 0.90197 0.90743 0.90104 0.93636 0.89516 0.97691 1.01295 0.92482 0.87545 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.04 1.04 6.00 71.98 0.43 1.47 16 3 O -0.40 -12.83 10.31 -148.98 -1.54 -14.37 16 4 C 0.10 3.18 1.43 -10.15 -0.01 3.17 16 5 C -0.14 -3.66 8.80 71.98 0.63 -3.02 16 6 C 0.00 -0.08 6.79 86.40 0.59 0.50 16 7 N -0.48 -22.09 6.11 -915.29 -5.59 -27.68 16 8 C 0.18 10.02 4.58 85.56 0.39 10.41 16 9 C -0.53 -31.39 8.84 25.60 0.23 -31.16 16 10 H 0.06 3.55 7.80 -2.91 -0.02 3.53 16 11 C 0.00 0.06 5.46 84.65 0.46 0.53 16 12 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 13 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C 0.01 0.35 7.38 86.41 0.64 0.98 16 18 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 19 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.07 1.38 6.40 -2.39 -0.02 1.37 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.07 2.02 8.00 -2.39 -0.02 2.00 16 25 H 0.08 1.68 6.27 -2.39 -0.01 1.66 16 26 H 0.05 2.08 7.78 -2.39 -0.02 2.06 16 27 H 0.09 3.29 8.10 -2.38 -0.02 3.27 16 28 H 0.00 0.30 8.14 -2.38 -0.02 0.28 16 29 H -0.03 -1.88 7.69 -2.39 -0.02 -1.89 16 30 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 31 H 0.11 3.56 8.10 -2.39 -0.02 3.54 16 32 H 0.05 2.21 7.79 -2.38 -0.02 2.19 16 Total: -1.00 -67.14 265.22 0.35 -66.79 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 1.07 Total: 4.91 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 4.10 Total: -19.25 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -5.31 Total: -85.20 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.54 Total: -14.37 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.14 0.35 -66.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399938542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.930 kcal (2) G-P(sol) polarization free energy of solvation -67.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds