Wall clock time and date at job start Mon Mar 30 2020 02:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00565 * 2 1 4 4 H 1.09008 * 112.84763 * 341.19786 * 3 2 1 5 5 C 1.53779 * 113.61695 * 112.50128 * 3 2 1 6 6 C 1.53782 * 87.08210 * 139.98546 * 5 3 2 7 7 H 1.08999 * 113.68675 * 89.12658 * 6 5 3 8 8 C 1.52995 * 113.61254 * 220.02130 * 6 5 3 9 9 N 1.46906 * 109.46978 * 272.49642 * 8 6 5 10 10 C 1.46901 * 110.99793 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46921 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.53780 * 87.08000 * 334.56786 * 6 5 3 20 20 H 1.08998 * 109.47158 * 299.99932 * 1 2 3 21 21 H 1.09004 * 109.47318 * 59.99976 * 1 2 3 22 22 H 1.09001 * 109.47595 * 180.02562 * 1 2 3 23 23 H 1.09003 * 113.61256 * 25.43318 * 5 3 2 24 24 H 1.09002 * 113.61167 * 254.53258 * 5 3 2 25 25 H 1.08995 * 109.46859 * 152.49934 * 8 6 5 26 26 H 1.09002 * 109.47639 * 32.49602 * 8 6 5 27 27 H 1.00899 * 110.99995 * 56.04730 * 9 8 6 28 28 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 29 29 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 30 30 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 31 31 H 1.09000 * 113.61509 * 139.98111 * 19 6 5 32 32 H 1.08997 * 113.61607 * 270.79921 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 -0.3238 5 6 2.7535 1.6488 1.3017 6 6 3.8228 2.3180 0.4222 7 1 3.6236 3.3693 0.2143 8 6 5.2543 2.0678 0.9006 9 7 5.6271 3.0912 1.8863 10 6 6.9989 2.8826 2.3687 11 6 7.3451 3.9494 3.3752 12 1 6.6187 4.7063 3.6314 13 6 8.5891 3.9584 3.9700 14 7 9.4735 3.0363 3.6584 15 14 9.0179 5.2803 5.2182 16 1 8.0739 5.2059 6.3622 17 1 10.4047 5.0695 5.7057 18 1 8.9163 6.6167 4.5786 19 6 3.3756 1.3718 -0.7045 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1166 0.7739 1.8410 24 1 2.2141 2.3476 1.9411 25 1 5.9351 2.1167 0.0509 26 1 5.3168 1.0812 1.3599 27 1 4.9725 3.1095 2.6539 28 1 7.6917 2.9374 1.5289 29 1 7.0738 1.9017 2.8380 30 1 10.3488 3.0429 4.0766 31 1 3.3385 1.8470 -1.6848 32 1 3.9098 0.4218 -0.7147 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600761274.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:07 Heat of formation + Delta-G solvation = -57.123751 kcal Electronic energy + Delta-G solvation = -12446.149638 eV Core-core repulsion = 10213.178598 eV Total energy + Delta-G solvation = -2232.971040 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50653 -37.71003 -36.22783 -34.31987 -29.91954 -27.77349 -26.82874 -26.37253 -23.66896 -22.70622 -20.47700 -18.65039 -17.60888 -16.79054 -16.57096 -16.36192 -16.00694 -15.29435 -14.84398 -14.65303 -13.80741 -13.68702 -13.37284 -13.21406 -12.78130 -12.69325 -12.55585 -12.28785 -12.14172 -11.71952 -11.60421 -11.25104 -11.07053 -10.66167 -10.37369 -9.14697 -8.22910 -6.35023 1.41501 1.45735 1.53789 2.40309 2.90624 3.10152 3.47999 3.64877 3.78687 3.90997 4.01248 4.34896 4.50668 4.56986 4.59834 4.77391 4.82931 4.86593 4.86902 4.90031 5.06488 5.08269 5.22355 5.27699 5.47071 5.61736 6.01039 6.36095 6.43820 6.71628 6.88433 7.36221 8.88833 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.087557 B = 0.005356 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.715636 B = 5226.886131 C = 5342.304443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.069 3.931 4 H 0.110 0.890 5 C -0.154 4.154 6 C -0.100 4.100 7 H 0.105 0.895 8 C 0.071 3.929 9 N -0.686 5.686 10 C 0.205 3.795 11 C -0.539 4.539 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.977 3.023 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.128 4.128 20 H 0.047 0.953 21 H 0.055 0.945 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.011 0.989 27 H 0.335 0.665 28 H -0.001 1.001 29 H -0.042 1.042 30 H 0.266 0.734 31 H 0.089 0.911 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.712 -2.743 -6.721 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.011 3.989 4 H 0.128 0.872 5 C -0.192 4.192 6 C -0.119 4.119 7 H 0.123 0.877 8 C -0.058 4.058 9 N -0.316 5.316 10 C 0.077 3.923 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.801 3.199 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.166 4.166 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.111 0.889 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.152 0.848 28 H 0.017 0.983 29 H -0.025 1.025 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.241 -2.519 -7.172 17.932 hybrid contribution 0.465 -0.315 1.195 1.321 sum -15.777 -2.834 -5.976 17.107 Atomic orbital electron populations 1.22970 0.79807 1.03665 1.00857 1.87920 1.21412 1.28365 1.94678 1.23744 0.93903 0.85195 0.96009 0.87225 1.23566 0.97689 1.00323 0.97580 1.22284 0.92362 1.00073 0.97135 0.87696 1.21891 0.96482 0.92067 0.95378 1.60567 1.04032 1.48778 1.18206 1.19230 0.86038 0.93578 0.93417 1.21533 0.99809 1.12888 1.23432 0.91541 1.26013 0.96021 0.98587 0.99225 1.70096 1.06684 1.36029 1.44789 0.85327 0.77218 0.78786 0.78598 1.18989 1.20748 1.19164 1.23218 0.95291 0.99611 0.98443 0.93458 0.92664 0.88851 0.91140 0.90354 0.92496 0.97075 0.84847 0.98294 1.02475 0.92560 0.89252 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.85 113.37 1.23 1.59 16 2 O -0.40 -9.65 10.71 -148.98 -1.60 -11.25 16 3 C 0.07 1.51 4.31 31.12 0.13 1.65 16 4 H 0.11 1.86 7.87 -2.38 -0.02 1.85 16 5 C -0.15 -3.94 7.46 31.12 0.23 -3.71 16 6 C -0.10 -2.79 3.90 -10.27 -0.04 -2.83 16 7 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 8 C 0.07 2.66 5.52 86.30 0.48 3.14 16 9 N -0.69 -30.73 6.49 -517.92 -3.36 -34.09 16 10 C 0.21 11.50 5.44 85.56 0.47 11.96 16 11 C -0.54 -31.55 9.32 25.60 0.24 -31.31 16 12 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 15 Si 0.98 44.79 29.54 68.60 2.03 46.81 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 C -0.13 -3.03 7.47 31.12 0.23 -2.80 16 20 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 21 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.07 2.05 7.90 -2.39 -0.02 2.03 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.01 0.43 7.84 -2.39 -0.02 0.41 16 27 H 0.33 14.18 8.72 -89.69 -0.78 13.40 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H -0.04 -2.56 8.14 -2.39 -0.02 -2.58 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -66.41 270.91 1.08 -65.33 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.29 Total: 12.61 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.43 Total: -21.87 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -3.08 Total: -91.64 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.60 Total: -11.25 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -66.41 1.08 -65.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600761274.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.207 kcal (2) G-P(sol) polarization free energy of solvation -66.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds