Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99965 * 2 1 4 4 C 1.52999 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47388 * 174.99731 * 4 3 2 6 6 C 1.53001 * 109.47580 * 54.99695 * 4 3 2 7 7 N 1.46506 * 109.47118 * 294.99873 * 4 3 2 8 8 C 1.36933 * 120.00035 * 239.99964 * 7 4 3 9 9 H 1.08002 * 120.00069 * 305.07217 * 8 7 4 10 10 C 1.38813 * 120.00014 * 125.06875 * 8 7 4 11 11 N 1.31621 * 120.00174 * 164.02614 * 10 8 7 12 12 Si 1.86802 * 119.99788 * 344.02095 * 10 8 7 13 13 H 1.48502 * 109.46780 * 90.87582 * 12 10 8 14 14 H 1.48495 * 109.47188 * 210.87034 * 12 10 8 15 15 H 1.48501 * 109.47358 * 330.87547 * 12 10 8 16 16 C 1.46504 * 119.99867 * 60.00235 * 7 4 3 17 17 C 1.52998 * 117.49524 * 182.93243 * 16 7 4 18 18 C 1.52999 * 117.49797 * 114.27187 * 16 7 4 19 19 H 1.09003 * 109.47140 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47150 * 299.99962 * 1 2 3 21 21 H 1.08995 * 109.47002 * 60.00114 * 1 2 3 22 22 H 1.08994 * 109.47188 * 299.99734 * 3 2 1 23 23 H 1.08993 * 109.47161 * 60.00107 * 3 2 1 24 24 H 1.09007 * 109.46401 * 59.99831 * 6 4 3 25 25 H 1.08993 * 109.47272 * 179.97438 * 6 4 3 26 26 H 1.09007 * 109.46994 * 300.00413 * 6 4 3 27 27 H 0.96996 * 119.99815 * 179.97438 * 11 10 8 28 28 H 1.08997 * 115.54945 * 328.60301 * 16 7 4 29 29 H 1.08996 * 117.50364 * 0.02562 * 17 16 7 30 30 H 1.09004 * 117.49447 * 145.01971 * 17 16 7 31 31 H 1.09002 * 117.49830 * 214.97604 * 18 16 7 32 32 H 1.09000 * 117.49899 * 0.02562 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0903 6 6 3.9781 0.3197 -1.1825 7 7 3.9767 0.5639 1.2509 8 6 4.8204 1.2408 2.0906 9 1 5.7603 1.6220 1.7196 10 6 4.4676 1.4370 3.4188 11 7 5.3806 1.7961 4.2961 12 14 2.6969 1.1916 3.9608 13 1 2.5027 -0.2152 4.3951 14 1 2.3943 2.1050 5.0919 15 1 1.7860 1.4897 2.8265 16 6 3.5153 -0.7810 1.6041 17 6 3.9559 -1.3467 2.9556 18 6 4.5626 -1.8948 1.6614 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.6886 1.8463 -0.8900 23 1 1.6886 1.8463 0.8899 24 1 3.6498 0.7816 -2.1137 25 1 5.0647 0.2340 -1.1832 26 1 3.5350 -0.6722 -1.0930 27 1 5.1340 1.9336 5.2241 28 1 2.5192 -1.0446 1.2487 29 1 4.5887 -0.7183 3.5822 30 1 3.2497 -1.9830 3.4891 31 1 4.2554 -2.8913 1.3442 32 1 5.5951 -1.6268 1.4369 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685967791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = -12.756360 kcal Electronic energy + Delta-G solvation = -13902.527889 eV Core-core repulsion = 11671.480763 eV Total energy + Delta-G solvation = -2231.047126 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.75121 -38.13250 -35.24847 -34.20702 -31.00735 -28.07325 -26.40752 -25.91187 -23.23497 -22.67507 -20.72846 -18.82043 -17.53982 -17.16201 -16.50278 -16.13955 -15.91470 -15.12035 -14.76142 -14.37686 -14.00023 -13.67948 -13.22895 -12.83684 -12.64557 -12.45010 -12.33192 -12.15578 -11.95149 -11.68903 -11.66355 -11.08197 -10.79327 -10.56036 -10.22188 -8.35339 -8.10997 -5.82627 1.41997 1.43863 1.56596 2.47418 2.99367 3.03738 3.23990 3.44281 4.24598 4.38330 4.38902 4.42587 4.51524 4.58526 4.61768 4.67670 4.78523 4.88462 4.93010 4.94761 5.04371 5.15241 5.35609 5.49277 5.56780 5.63578 6.00716 6.28823 6.38236 7.15584 7.64103 8.17719 8.96151 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031446 B = 0.016834 C = 0.015389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.214711 B = 1662.871193 C = 1819.045833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.052 3.948 4 C 0.162 3.838 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.577 5.577 8 C -0.276 4.276 9 H 0.024 0.976 10 C 0.014 3.986 11 N -0.947 5.947 12 Si 0.940 3.060 13 H -0.257 1.257 14 H -0.317 1.317 15 H -0.253 1.253 16 C 0.117 3.883 17 C -0.222 4.222 18 C -0.201 4.201 19 H 0.098 0.902 20 H 0.029 0.971 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.029 0.971 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.263 0.737 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 -4.248 -9.056 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C -0.026 4.026 4 C 0.056 3.944 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.297 5.297 8 C -0.406 4.406 9 H 0.042 0.958 10 C -0.184 4.184 11 N -0.588 5.588 12 Si 0.767 3.233 13 H -0.182 1.182 14 H -0.247 1.247 15 H -0.177 1.177 16 C 0.011 3.989 17 C -0.260 4.260 18 C -0.241 4.241 19 H 0.117 0.883 20 H 0.047 0.953 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.362 -4.335 -8.924 14.346 hybrid contribution -0.297 0.438 0.975 1.109 sum -10.659 -3.897 -7.949 13.856 Atomic orbital electron populations 1.22896 0.80840 1.03531 1.00117 1.87853 1.20341 1.28109 1.95105 1.23208 0.95116 0.84660 0.99603 1.20902 0.90751 0.96499 0.86233 0.90776 1.21965 0.99884 1.00683 0.97242 1.43680 1.53760 1.11520 1.20740 1.18374 0.98049 1.32555 0.91575 0.95801 1.26424 1.00511 0.94837 0.96675 1.69997 1.35132 1.50635 1.03075 0.85964 0.82478 0.77951 0.76899 1.18166 1.24660 1.17718 1.21775 0.96252 0.84293 0.96629 1.23435 1.05111 1.05095 0.92350 1.23317 0.99344 0.99742 1.01685 0.88333 0.95260 0.92582 0.91110 0.95240 0.91041 0.94587 0.92439 0.92779 0.85202 0.90318 0.89040 0.87739 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.39 -12.69 6.80 -148.98 -1.01 -13.70 16 3 C 0.05 1.76 5.69 71.98 0.41 2.17 16 4 C 0.16 6.31 3.24 44.99 0.15 6.46 16 5 H 0.07 2.98 7.89 -2.39 -0.02 2.96 16 6 C -0.14 -4.62 9.00 71.98 0.65 -3.97 16 7 N -0.58 -27.32 1.95 -654.24 -1.27 -28.59 16 8 C -0.28 -15.78 9.10 84.03 0.76 -15.02 16 9 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16 10 C 0.01 0.81 3.70 84.86 0.31 1.12 16 11 N -0.95 -59.28 13.97 21.65 0.30 -58.97 16 12 Si 0.94 46.52 24.92 68.60 1.71 48.23 16 13 H -0.26 -12.07 5.71 99.48 0.57 -11.50 16 14 H -0.32 -16.07 7.11 99.48 0.71 -15.37 16 15 H -0.25 -11.88 5.49 99.48 0.55 -11.33 16 16 C 0.12 5.10 3.92 44.99 0.18 5.28 16 17 C -0.22 -10.09 6.67 30.62 0.20 -9.89 16 18 C -0.20 -8.26 10.37 30.62 0.32 -7.95 16 19 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 20 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 21 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.03 1.13 6.53 -2.39 -0.02 1.11 16 24 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.93 7.09 -2.38 -0.02 1.91 16 27 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.13 5.27 5.36 -2.39 -0.01 5.25 16 29 H 0.08 4.25 5.06 -2.39 -0.01 4.24 16 30 H 0.09 3.73 7.82 -2.38 -0.02 3.71 16 31 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -65.23 249.89 4.73 -60.50 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.78 Total: 12.55 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 4.23 Total: -20.01 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -0.97 Total: -87.57 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.01 Total: -13.70 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.71 Total: 48.23 kcal Total: -65.23 4.73 -60.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.745 kcal (2) G-P(sol) polarization free energy of solvation -65.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds