Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46922 * 2 1 4 4 C 1.50692 * 109.47326 * 239.99164 * 2 1 3 5 5 H 1.07998 * 120.00569 * 275.01147 * 4 2 1 6 6 C 1.37886 * 119.99723 * 95.00643 * 4 2 1 7 7 N 1.31510 * 119.99920 * 184.91398 * 6 4 2 8 8 Si 1.86799 * 119.99893 * 4.92013 * 6 4 2 9 9 H 1.48500 * 109.47196 * 84.83201 * 8 6 4 10 10 H 1.48498 * 109.46890 * 204.83333 * 8 6 4 11 11 H 1.48500 * 109.47066 * 324.82993 * 8 6 4 12 12 N 1.46903 * 109.46437 * 119.99621 * 2 1 3 13 13 O 1.46295 * 111.00164 * 60.00162 * 12 2 1 14 14 C 1.42905 * 114.00087 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47470 * 179.97438 * 14 13 12 16 16 C 1.53778 * 113.61767 * 274.14413 * 15 14 13 17 17 C 1.53949 * 87.01943 * 220.04589 * 16 15 14 18 18 C 1.53776 * 113.61760 * 176.53084 * 15 14 13 19 19 H 1.09004 * 109.46846 * 54.98369 * 1 2 3 20 20 H 1.09003 * 109.47235 * 174.97755 * 1 2 3 21 21 H 1.09001 * 109.47683 * 294.98354 * 1 2 3 22 22 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 23 23 H 1.00901 * 110.99455 * 183.95484 * 12 2 1 24 24 H 1.08994 * 109.47141 * 300.00858 * 14 13 12 25 25 H 1.09005 * 109.46716 * 59.99903 * 14 13 12 26 26 H 1.09008 * 112.84371 * 45.33285 * 15 14 13 27 27 H 1.09006 * 113.61197 * 334.56303 * 16 15 14 28 28 H 1.09000 * 113.61523 * 105.46702 * 16 15 14 29 29 H 1.09005 * 113.53915 * 270.81045 * 17 16 15 30 30 H 1.09000 * 113.67030 * 139.92727 * 17 16 15 31 31 H 1.09001 * 113.61406 * 254.53769 * 18 15 14 32 32 H 1.09007 * 113.61171 * 25.35210 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1354 -1.7856 -1.2288 6 6 2.3604 0.0119 -2.3580 7 7 2.7062 -0.6134 -3.4620 8 14 2.3139 1.8789 -2.3174 9 1 3.5995 2.3946 -1.7821 10 1 2.1062 2.3988 -3.6928 11 1 1.1989 2.3274 -1.4451 12 7 2.0195 -0.6925 1.1996 13 8 1.5504 -2.0777 1.2334 14 6 1.9912 -2.8129 2.3769 15 6 1.4436 -4.2399 2.3080 16 6 0.0300 -4.3863 2.8954 17 6 0.5062 -5.7200 3.4992 18 6 1.9307 -5.1427 3.4535 19 1 -0.3633 0.5897 -0.8417 20 1 -0.3634 -1.0237 -0.0900 21 1 -0.3634 0.4340 0.9315 22 1 2.9373 -0.1052 -4.2552 23 1 3.0260 -0.6500 1.2560 24 1 3.0806 -2.8417 2.3925 25 1 1.6276 -2.3279 3.2828 26 1 1.5548 -4.6886 1.3208 27 1 -0.2127 -3.6307 3.6427 28 1 -0.7472 -4.5008 2.1398 29 1 0.3598 -6.5741 2.8380 30 1 0.1396 -5.8984 4.5101 31 1 2.6859 -5.8668 3.1478 32 1 2.2100 -4.5941 4.3532 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688503093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = 7.730717 kcal Electronic energy + Delta-G solvation = -12880.079416 eV Core-core repulsion = 10649.920676 eV Total energy + Delta-G solvation = -2230.158740 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.73181 -36.07396 -33.84547 -31.60976 -28.33232 -26.63120 -25.46039 -25.02400 -22.28839 -19.86428 -19.18277 -17.13998 -16.19095 -15.37564 -15.13160 -14.65523 -14.05828 -13.44278 -12.91994 -12.49853 -12.34808 -12.25711 -11.74599 -11.51159 -11.14837 -10.91528 -10.76505 -10.57116 -10.37984 -10.21376 -10.02336 -9.84496 -9.50305 -9.12578 -8.60690 -7.54794 -6.11834 -4.12546 3.22944 3.32501 3.33960 3.72469 4.36195 4.74156 4.79094 4.91031 5.02507 5.24206 5.65782 5.71575 5.81525 5.85782 5.91661 5.92098 6.05708 6.14599 6.21556 6.39797 6.48520 6.64426 6.73530 6.81003 7.05625 7.40155 7.44897 7.89422 8.23998 8.49810 8.99086 9.50617 11.01628 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061445 B = 0.007523 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.581200 B = 3721.003489 C = 3855.972707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.165 3.835 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.500 5.500 13 O -0.240 6.240 14 C 0.070 3.930 15 C -0.106 4.106 16 C -0.132 4.132 17 C -0.143 4.143 18 C -0.132 4.132 19 H 0.042 0.958 20 H 0.051 0.949 21 H 0.028 0.972 22 H 0.264 0.736 23 H 0.320 0.680 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 -4.777 12.348 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.057 3.943 3 H 0.075 0.925 4 C -0.578 4.578 5 H 0.097 0.903 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.170 5.170 13 O -0.247 6.247 14 C -0.008 4.008 15 C -0.126 4.126 16 C -0.169 4.169 17 C -0.181 4.181 18 C -0.170 4.170 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.074 0.926 23 H 0.133 0.867 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.738 -4.599 12.393 13.500 hybrid contribution 0.863 0.674 -0.835 1.377 sum -1.875 -3.925 11.558 12.350 Atomic orbital electron populations 1.21753 0.97204 1.01006 0.98213 1.19911 0.93547 0.93183 0.87673 0.92521 1.21577 1.43518 0.96276 0.96385 0.90274 1.25109 0.94373 0.98343 0.95275 1.69925 1.45926 1.35857 1.01640 0.86906 0.79124 0.86369 0.77520 1.20054 1.21252 1.18743 1.67190 1.14587 0.93734 1.41452 1.90892 1.71389 1.20195 1.42251 1.22266 0.97281 0.90730 0.90527 1.22518 0.96498 0.94358 0.99187 1.22949 0.97000 0.96889 1.00072 1.22845 0.96712 0.97646 1.00867 1.22887 0.96896 0.98637 0.98575 0.93899 0.92944 0.95275 0.92620 0.86665 0.94415 0.93743 0.88618 0.90150 0.91406 0.90360 0.91725 0.91527 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.15 37.16 0.34 -2.50 16 2 C 0.17 4.05 2.81 -68.87 -0.19 3.86 16 3 H 0.06 1.37 5.29 -51.93 -0.27 1.09 16 4 C -0.54 -15.46 8.82 -34.44 -0.30 -15.76 16 5 H 0.08 2.55 7.71 -52.49 -0.40 2.15 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 8 Si 0.87 21.26 26.99 -169.99 -4.59 16.67 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.11 6.82 56.52 0.39 -5.73 16 12 N -0.50 -11.02 7.11 -5.66 -0.04 -11.06 16 13 O -0.24 -5.28 9.88 -13.92 -0.14 -5.42 16 14 C 0.07 1.19 6.21 37.16 0.23 1.42 16 15 C -0.11 -1.55 4.00 -89.81 -0.36 -1.91 16 16 C -0.13 -1.73 7.65 -25.83 -0.20 -1.92 16 17 C -0.14 -1.55 8.09 -25.83 -0.21 -1.76 16 18 C -0.13 -1.51 7.65 -25.92 -0.20 -1.71 16 19 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 20 H 0.05 1.25 7.80 -51.93 -0.41 0.84 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.32 6.63 8.99 -39.29 -0.35 6.28 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.71 7.87 -51.93 -0.41 0.30 16 26 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 27 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.85 8.10 -51.92 -0.42 0.42 16 LS Contribution 265.95 15.07 4.01 4.01 Total: -1.00 -30.80 265.95 -6.18 -36.98 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.21 Total: 3.95 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.99 Total: -18.31 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.73 Total: -37.89 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.14 Total: -5.42 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.59 Total: 16.67 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.80 -6.18 -36.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688503093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.714 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds