Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46922 * 2 1 4 4 C 1.50692 * 109.47326 * 239.99164 * 2 1 3 5 5 H 1.07998 * 120.00569 * 275.01147 * 4 2 1 6 6 C 1.37886 * 119.99723 * 95.00643 * 4 2 1 7 7 N 1.31510 * 119.99920 * 184.91398 * 6 4 2 8 8 Si 1.86799 * 119.99893 * 4.92013 * 6 4 2 9 9 H 1.48500 * 109.47196 * 84.83201 * 8 6 4 10 10 H 1.48498 * 109.46890 * 204.83333 * 8 6 4 11 11 H 1.48500 * 109.47066 * 324.82993 * 8 6 4 12 12 N 1.46903 * 109.46437 * 119.99621 * 2 1 3 13 13 O 1.46295 * 111.00164 * 60.00162 * 12 2 1 14 14 C 1.42905 * 114.00087 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47470 * 179.97438 * 14 13 12 16 16 C 1.53778 * 113.61767 * 274.14413 * 15 14 13 17 17 C 1.53949 * 87.01943 * 220.04589 * 16 15 14 18 18 C 1.53776 * 113.61760 * 176.53084 * 15 14 13 19 19 H 1.09004 * 109.46846 * 54.98369 * 1 2 3 20 20 H 1.09003 * 109.47235 * 174.97755 * 1 2 3 21 21 H 1.09001 * 109.47683 * 294.98354 * 1 2 3 22 22 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 23 23 H 1.00901 * 110.99455 * 183.95484 * 12 2 1 24 24 H 1.08994 * 109.47141 * 300.00858 * 14 13 12 25 25 H 1.09005 * 109.46716 * 59.99903 * 14 13 12 26 26 H 1.09008 * 112.84371 * 45.33285 * 15 14 13 27 27 H 1.09006 * 113.61197 * 334.56303 * 16 15 14 28 28 H 1.09000 * 113.61523 * 105.46702 * 16 15 14 29 29 H 1.09005 * 113.53915 * 270.81045 * 17 16 15 30 30 H 1.09000 * 113.67030 * 139.92727 * 17 16 15 31 31 H 1.09001 * 113.61406 * 254.53769 * 18 15 14 32 32 H 1.09007 * 113.61171 * 25.35210 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1354 -1.7856 -1.2288 6 6 2.3604 0.0119 -2.3580 7 7 2.7062 -0.6134 -3.4620 8 14 2.3139 1.8789 -2.3174 9 1 3.5995 2.3946 -1.7821 10 1 2.1062 2.3988 -3.6928 11 1 1.1989 2.3274 -1.4451 12 7 2.0195 -0.6925 1.1996 13 8 1.5504 -2.0777 1.2334 14 6 1.9912 -2.8129 2.3769 15 6 1.4436 -4.2399 2.3080 16 6 0.0300 -4.3863 2.8954 17 6 0.5062 -5.7200 3.4992 18 6 1.9307 -5.1427 3.4535 19 1 -0.3633 0.5897 -0.8417 20 1 -0.3634 -1.0237 -0.0900 21 1 -0.3634 0.4340 0.9315 22 1 2.9373 -0.1052 -4.2552 23 1 3.0260 -0.6500 1.2560 24 1 3.0806 -2.8417 2.3925 25 1 1.6276 -2.3279 3.2828 26 1 1.5548 -4.6886 1.3208 27 1 -0.2127 -3.6307 3.6427 28 1 -0.7472 -4.5008 2.1398 29 1 0.3598 -6.5741 2.8380 30 1 0.1396 -5.8984 4.5101 31 1 2.6859 -5.8668 3.1478 32 1 2.2100 -4.5941 4.3532 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688503093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = -12.829590 kcal Electronic energy + Delta-G solvation = -12880.970978 eV Core-core repulsion = 10649.920676 eV Total energy + Delta-G solvation = -2231.050301 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.82333 -37.79157 -35.71317 -33.70429 -29.85617 -28.19665 -27.17985 -26.44576 -23.46160 -21.79707 -20.26892 -19.25295 -17.84536 -17.00667 -16.47288 -16.06338 -15.63964 -15.06228 -14.52040 -14.34197 -14.17216 -13.30433 -13.11228 -12.97337 -12.78242 -12.71235 -12.53381 -12.28032 -11.81297 -11.56303 -11.41682 -11.30691 -11.17613 -10.82842 -10.72075 -9.37433 -8.34169 -6.41901 1.34574 1.35713 1.47392 2.09920 2.31205 3.03367 3.70899 3.75512 3.86985 3.99180 4.26239 4.46919 4.55595 4.63904 4.69972 4.86019 4.87332 4.88030 4.94581 4.98409 5.09731 5.12933 5.20499 5.36455 5.40426 5.57887 5.64980 5.94579 6.23181 6.60085 6.67641 7.26040 8.83266 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061445 B = 0.007523 C = 0.007260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.581200 B = 3721.003489 C = 3855.972707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.166 3.834 3 H 0.072 0.928 4 C -0.545 4.545 5 H 0.023 0.977 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.239 1.239 12 N -0.491 5.491 13 O -0.270 6.270 14 C 0.066 3.934 15 C -0.120 4.120 16 C -0.136 4.136 17 C -0.131 4.131 18 C -0.120 4.120 19 H 0.044 0.956 20 H 0.032 0.968 21 H 0.056 0.944 22 H 0.267 0.733 23 H 0.326 0.674 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -3.555 14.312 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.056 3.944 3 H 0.090 0.910 4 C -0.584 4.584 5 H 0.042 0.958 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.184 1.184 10 H -0.211 1.211 11 H -0.162 1.162 12 N -0.160 5.160 13 O -0.279 6.279 14 C -0.011 4.011 15 C -0.140 4.140 16 C -0.173 4.173 17 C -0.168 4.168 18 C -0.157 4.157 19 H 0.063 0.937 20 H 0.051 0.949 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.139 0.861 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.050 -3.391 14.392 15.097 hybrid contribution 0.973 0.156 -1.425 1.733 sum -2.077 -3.235 12.966 13.524 Atomic orbital electron populations 1.21653 0.96025 1.00135 0.99767 1.19898 0.94496 0.93615 0.86365 0.91045 1.21704 1.43976 0.94021 0.98683 0.95814 1.26103 0.93650 1.04534 0.94400 1.70093 1.47496 1.38414 1.02697 0.85727 0.80533 0.78662 0.78055 1.18386 1.21129 1.16207 1.67062 1.14974 0.94429 1.39499 1.90880 1.72056 1.20070 1.44862 1.22557 0.97730 0.91424 0.89430 1.22628 0.98496 0.93435 0.99487 1.22996 0.95549 0.98788 0.99976 1.22801 0.95702 0.96319 1.01959 1.22880 0.97633 0.97848 0.97368 0.93655 0.94898 0.92466 0.92384 0.86060 0.94035 0.92279 0.91053 0.89542 0.92714 0.89953 0.89499 0.90689 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 9.15 71.98 0.66 -4.59 16 2 C 0.17 7.95 2.81 44.17 0.12 8.07 16 3 H 0.07 3.23 5.29 -2.39 -0.01 3.22 16 4 C -0.54 -31.98 8.82 25.60 0.23 -31.76 16 5 H 0.02 1.61 7.71 -2.91 -0.02 1.59 16 6 C 0.01 0.66 5.47 84.66 0.46 1.12 16 7 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 8 Si 0.95 43.02 26.99 68.60 1.85 44.87 16 9 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.24 -9.87 6.82 99.48 0.68 -9.19 16 12 N -0.49 -21.30 7.11 -171.81 -1.22 -22.53 16 13 O -0.27 -12.06 9.88 -50.15 -0.50 -12.55 16 14 C 0.07 2.22 6.21 71.98 0.45 2.66 16 15 C -0.12 -3.50 4.00 -10.27 -0.04 -3.54 16 16 C -0.14 -3.43 7.65 31.18 0.24 -3.19 16 17 C -0.13 -2.52 8.09 31.18 0.25 -2.27 16 18 C -0.12 -2.49 7.65 31.12 0.24 -2.25 16 19 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 20 H 0.03 1.55 7.80 -2.39 -0.02 1.53 16 21 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 23 H 0.33 13.32 8.99 -89.69 -0.81 12.51 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.79 7.87 -2.38 -0.02 1.77 16 26 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.09 2.07 7.92 -2.38 -0.02 2.05 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.72 8.10 -2.38 -0.02 1.70 16 Total: -1.00 -67.74 265.95 3.29 -64.45 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.25 Total: 21.14 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 2.61 Total: -35.75 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -0.92 Total: -82.15 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.50 Total: -12.55 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.85 Total: 44.87 kcal Total: -67.74 3.29 -64.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688503093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.616 kcal (2) G-P(sol) polarization free energy of solvation -67.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds