Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99837 * 2 1 4 4 C 1.53002 * 115.55936 * 34.32061 * 3 2 1 5 5 C 1.53003 * 117.50353 * 248.62588 * 3 2 1 6 6 C 1.52998 * 117.49745 * 180.02562 * 3 2 1 7 7 H 1.08998 * 117.50269 * 359.97438 * 6 3 2 8 8 N 1.46906 * 117.49787 * 214.98249 * 6 3 2 9 9 C 1.46902 * 110.99573 * 155.00210 * 8 6 3 10 10 H 1.08995 * 109.47359 * 35.00383 * 9 8 6 11 11 C 1.52999 * 109.47083 * 274.99770 * 9 8 6 12 12 C 1.50706 * 109.46835 * 155.00105 * 9 8 6 13 13 H 1.08004 * 119.99710 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99843 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00465 * 0.02562 * 14 12 9 16 16 Si 1.86808 * 119.99940 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46938 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46969 * 120.00068 * 16 14 12 19 19 H 1.48500 * 109.47218 * 240.00334 * 16 14 12 20 20 H 1.09007 * 109.47072 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46965 * 299.98919 * 1 2 3 22 22 H 1.08999 * 109.47856 * 59.99509 * 1 2 3 23 23 H 1.09005 * 109.46959 * 205.68911 * 4 3 2 24 24 H 1.08994 * 109.46967 * 325.68096 * 4 3 2 25 25 H 1.08995 * 109.47674 * 85.68494 * 4 3 2 26 26 H 1.09002 * 117.50022 * 145.02107 * 5 3 2 27 27 H 1.09005 * 117.49488 * 0.02562 * 5 3 2 28 28 H 1.00896 * 111.00309 * 31.04622 * 8 6 3 29 29 H 1.09000 * 109.47023 * 60.00485 * 11 9 8 30 30 H 1.09004 * 109.46766 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.46954 * 300.00265 * 11 9 8 32 32 H 0.96994 * 120.00796 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.2372 2.3721 0.7782 5 6 2.7494 1.7498 -1.2638 6 6 3.5373 1.3988 -0.0006 7 1 4.0987 0.4645 -0.0006 8 7 4.1495 2.5057 0.7464 9 6 5.5184 2.1686 1.1593 10 1 5.9897 1.5570 0.3901 11 6 5.4768 1.3900 2.4757 12 6 6.3119 3.4355 1.3499 13 1 5.8460 4.3951 1.1808 14 6 7.6327 3.3696 1.7402 15 7 8.2001 2.2011 1.9456 16 14 8.6165 4.9400 1.9757 17 1 7.7541 6.1130 1.6831 18 1 9.0971 5.0172 3.3786 19 1 9.7802 4.9381 1.0532 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3635 0.5139 -0.8899 23 1 1.4655 3.3566 0.3698 24 1 0.1676 2.1818 0.6910 25 1 1.5279 2.3380 1.8282 26 1 2.6850 2.8020 -1.5408 27 1 2.7920 1.0464 -2.0954 28 1 3.5843 2.7612 1.5423 29 1 4.9029 0.4736 2.3379 30 1 6.4926 1.1402 2.7822 31 1 5.0055 2.0017 3.2450 32 1 9.1293 2.1547 2.2198 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694437345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -16.584257 kcal Electronic energy + Delta-G solvation = -13016.654409 eV Core-core repulsion = 10785.441293 eV Total energy + Delta-G solvation = -2231.213116 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.92706 -36.07078 -33.95971 -31.52026 -28.59280 -27.40437 -26.29729 -25.10995 -21.23151 -20.23766 -19.50421 -16.79153 -16.07443 -15.33157 -14.93213 -14.64699 -14.13763 -13.24234 -13.22254 -12.44342 -12.33001 -12.24109 -11.87373 -11.44192 -11.09109 -10.99567 -10.94885 -10.58994 -10.56576 -10.14095 -9.96359 -9.90783 -8.98672 -8.70136 -8.35422 -7.26001 -5.97663 -4.01172 3.32695 3.40226 3.45324 3.72692 4.23724 4.45262 4.93658 5.07976 5.22482 5.34113 5.40433 5.43492 5.63564 5.72606 5.90425 5.99410 6.06528 6.22172 6.23149 6.49013 6.72838 6.87491 7.11067 7.33521 7.47536 7.75176 7.89578 8.27765 8.49501 8.59684 9.05826 9.63982 11.09619 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068816 B = 0.007544 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.781736 B = 3710.717391 C = 3831.366527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.009 3.991 4 C -0.138 4.138 5 C -0.185 4.185 6 C 0.062 3.938 7 H 0.097 0.903 8 N -0.648 5.648 9 C 0.210 3.790 10 H 0.037 0.963 11 C -0.170 4.170 12 C -0.495 4.495 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 H 0.081 0.919 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.329 0.671 29 H 0.007 0.993 30 H 0.090 0.910 31 H 0.027 0.973 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 -1.698 -2.333 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C -0.032 4.032 4 C -0.195 4.195 5 C -0.224 4.224 6 C -0.050 4.050 7 H 0.115 0.885 8 N -0.279 5.279 9 C 0.103 3.897 10 H 0.055 0.945 11 C -0.229 4.229 12 C -0.534 4.534 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 H 0.099 0.901 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.149 0.851 29 H 0.026 0.974 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.906 -1.586 -2.826 12.339 hybrid contribution 0.240 0.233 0.821 0.886 sum -11.666 -1.353 -2.005 11.914 Atomic orbital electron populations 1.22727 0.81962 1.02035 0.99969 1.87902 1.19183 1.25810 1.94532 1.22478 0.94433 0.84526 1.01726 1.21647 0.99259 0.98150 1.00449 1.23873 1.04082 1.02010 0.92430 1.22779 0.88379 0.95509 0.98302 0.88496 1.60722 1.04977 1.33652 1.28499 1.19298 0.82852 0.95516 0.92039 0.94515 1.22459 1.03206 0.96907 1.00319 1.21162 0.95118 0.92716 1.44412 0.91855 1.24950 0.97705 0.96239 0.95647 1.69892 1.12682 1.23224 1.47861 0.86436 0.79916 0.83499 0.77510 1.19745 1.21206 1.21117 0.90092 0.93734 0.94203 0.90441 0.91929 0.91681 0.88199 0.89101 0.85094 0.97377 0.89187 0.95374 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.05 101.05 1.02 1.36 16 2 O -0.36 -5.79 10.95 -35.23 -0.39 -6.17 16 3 C 0.01 0.15 3.03 -90.62 -0.27 -0.12 16 4 C -0.14 -1.90 8.43 37.16 0.31 -1.58 16 5 C -0.18 -3.09 10.05 -26.75 -0.27 -3.35 16 6 C 0.06 1.21 5.90 -67.73 -0.40 0.81 16 7 H 0.10 2.02 7.77 -51.93 -0.40 1.62 16 8 N -0.65 -14.02 6.29 -100.97 -0.64 -14.66 16 9 C 0.21 5.38 2.47 -68.86 -0.17 5.21 16 10 H 0.04 1.04 7.73 -51.93 -0.40 0.63 16 11 C -0.17 -4.17 8.94 37.16 0.33 -3.83 16 12 C -0.50 -13.81 8.84 -34.44 -0.30 -14.11 16 13 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 14 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 15 N -0.90 -25.89 11.32 55.43 0.63 -25.26 16 16 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 21 H 0.04 0.47 6.47 -51.93 -0.34 0.13 16 22 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 1.05 7.90 -51.93 -0.41 0.64 16 24 H 0.06 0.72 5.78 -51.93 -0.30 0.42 16 25 H 0.06 0.90 7.59 -51.93 -0.39 0.51 16 26 H 0.10 1.62 8.05 -51.93 -0.42 1.21 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.33 6.72 6.94 -39.29 -0.27 6.44 16 29 H 0.01 0.17 8.07 -51.93 -0.42 -0.25 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 263.48 15.07 3.97 3.97 Total: -1.00 -29.23 263.48 -6.20 -35.44 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.91 Total: 4.32 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 0.15 Total: -14.18 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.01 Total: -39.92 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.39 Total: -6.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.23 -6.20 -35.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694437345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.851 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds