Wall clock time and date at job start Mon Mar 30 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.53002 * 115.54900 * 34.33235 * 3 2 1 5 5 C 1.52993 * 117.49943 * 248.62063 * 3 2 1 6 6 C 1.52992 * 60.00262 * 252.51203 * 5 3 2 7 7 H 1.08996 * 117.50207 * 252.51141 * 6 5 3 8 8 N 1.46908 * 117.51881 * 107.47943 * 6 5 3 9 9 C 1.46896 * 110.99873 * 136.37388 * 8 6 5 10 10 H 1.09001 * 109.47420 * 325.00288 * 9 8 6 11 11 C 1.53003 * 109.47489 * 84.99930 * 9 8 6 12 12 C 1.50697 * 109.47277 * 205.00427 * 9 8 6 13 13 H 1.08001 * 119.99878 * 359.97438 * 12 9 8 14 14 C 1.37873 * 120.00299 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00106 * 359.97438 * 14 12 9 16 16 Si 1.86808 * 120.00065 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47251 * 89.99311 * 16 14 12 18 18 H 1.48500 * 109.46913 * 209.99515 * 16 14 12 19 19 H 1.48501 * 109.46628 * 329.99279 * 16 14 12 20 20 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 21 21 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 22 22 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47469 * 85.58034 * 4 3 2 24 24 H 1.08992 * 109.46910 * 205.58440 * 4 3 2 25 25 H 1.09005 * 109.46939 * 325.58225 * 4 3 2 26 26 H 1.09007 * 117.49854 * 0.02562 * 5 3 2 27 27 H 1.08998 * 117.49879 * 145.01800 * 5 3 2 28 28 H 1.00898 * 110.99685 * 12.41781 * 8 6 5 29 29 H 1.09003 * 109.46869 * 300.00570 * 11 9 8 30 30 H 1.09001 * 109.46497 * 59.99793 * 11 9 8 31 31 H 1.08991 * 109.47550 * 179.97438 * 11 9 8 32 32 H 0.96996 * 119.99847 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.2374 2.3719 0.7785 5 6 2.7496 1.7496 -1.2637 6 6 3.5375 1.3988 0.0000 7 1 3.9915 2.2201 0.5543 8 7 4.2940 0.1394 0.0005 9 6 5.6305 0.3285 0.5801 10 1 6.0043 1.3179 0.3164 11 6 5.5485 0.2036 2.1028 12 6 6.5657 -0.7223 0.0395 13 1 6.2033 -1.4573 -0.6640 14 6 7.8836 -0.7460 0.4436 15 7 8.3248 0.1488 1.3006 16 14 9.0430 -2.0481 -0.2271 17 1 9.6904 -1.5442 -1.4648 18 1 10.0840 -2.3536 0.7869 19 1 8.2762 -3.2816 -0.5365 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.5269 2.3364 1.8288 24 1 1.4669 3.3566 0.3715 25 1 0.1676 2.1825 0.6899 26 1 2.7923 1.0461 -2.0953 27 1 2.6853 2.8018 -1.5408 28 1 4.3545 -0.2464 -0.9298 29 1 4.8720 0.9636 2.4938 30 1 5.1747 -0.7858 2.3665 31 1 6.5402 0.3434 2.5328 32 1 9.2521 0.1323 1.5847 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694437346.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:55 Heat of formation + Delta-G solvation = -15.558786 kcal Electronic energy + Delta-G solvation = -13026.816887 eV Core-core repulsion = 10795.648239 eV Total energy + Delta-G solvation = -2231.168648 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.78050 -35.81989 -33.94951 -31.58994 -28.78592 -27.08046 -26.13779 -25.11239 -21.35037 -19.85700 -19.70542 -16.60336 -15.93162 -15.18647 -14.74155 -14.68030 -13.87793 -13.45658 -13.07866 -12.92715 -12.43565 -11.99027 -11.77886 -11.32066 -11.07062 -10.93989 -10.73756 -10.55641 -10.55506 -10.11681 -9.93091 -9.85671 -8.86857 -8.63457 -8.40751 -7.07491 -6.00110 -4.06210 3.31772 3.38188 3.42954 3.98199 4.23417 4.42347 4.82746 5.16967 5.24570 5.31969 5.47905 5.53469 5.67011 5.74136 5.86897 5.92123 6.03232 6.11304 6.19225 6.40583 6.92364 7.20791 7.27693 7.52510 7.66670 7.82509 7.93823 8.30375 8.45077 8.70610 9.04678 9.59513 11.06335 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057865 B = 0.007897 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.765120 B = 3544.691224 C = 3682.943376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.329 6.329 3 C 0.031 3.969 4 C -0.140 4.140 5 C -0.229 4.229 6 C 0.070 3.930 7 H 0.108 0.892 8 N -0.645 5.645 9 C 0.211 3.789 10 H 0.003 0.997 11 C -0.123 4.123 12 C -0.518 4.518 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.041 0.959 21 H 0.034 0.966 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.336 0.664 29 H 0.004 0.996 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 3.750 -2.198 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.246 6.246 3 C -0.011 4.011 4 C -0.198 4.198 5 C -0.269 4.269 6 C -0.043 4.043 7 H 0.126 0.874 8 N -0.274 5.274 9 C 0.104 3.896 10 H 0.021 0.979 11 C -0.182 4.182 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.156 0.844 29 H 0.023 0.977 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.729 3.371 -1.498 12.295 hybrid contribution 0.822 0.009 -1.091 1.366 sum -10.907 3.379 -2.589 11.708 Atomic orbital electron populations 1.22754 0.83013 1.02023 0.99388 1.88114 1.17898 1.24452 1.94123 1.22339 0.94621 0.84831 0.99284 1.21759 0.99894 0.97404 1.00710 1.24225 1.07617 1.01346 0.93670 1.22840 0.89583 0.94509 0.97349 0.87421 1.60358 1.19725 1.20980 1.26362 1.19194 0.82442 0.95671 0.92324 0.97948 1.21714 1.00853 0.97738 0.97880 1.21268 0.94059 1.14248 1.26083 0.92178 1.24910 0.98098 0.95972 0.95001 1.69899 1.15796 1.34955 1.32309 0.86512 0.80481 0.81980 0.78531 1.20770 1.21194 1.19824 0.94061 0.94707 0.90101 0.91433 0.91542 0.91775 0.88608 0.89243 0.84436 0.97679 0.94921 0.90129 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.05 101.05 1.02 1.34 16 2 O -0.33 -5.88 10.71 -35.23 -0.38 -6.26 16 3 C 0.03 0.52 3.03 -90.62 -0.27 0.24 16 4 C -0.14 -1.82 9.49 37.16 0.35 -1.47 16 5 C -0.23 -3.68 9.82 -26.74 -0.26 -3.95 16 6 C 0.07 1.35 5.74 -67.71 -0.39 0.96 16 7 H 0.11 2.07 7.77 -51.93 -0.40 1.67 16 8 N -0.64 -14.77 6.35 -100.96 -0.64 -15.41 16 9 C 0.21 5.52 2.50 -68.87 -0.17 5.34 16 10 H 0.00 0.08 7.73 -51.93 -0.40 -0.32 16 11 C -0.12 -3.19 9.19 37.16 0.34 -2.85 16 12 C -0.52 -14.58 8.59 -34.44 -0.30 -14.88 16 13 H 0.06 1.68 7.62 -52.49 -0.40 1.28 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H 0.04 0.47 6.47 -51.93 -0.34 0.14 16 21 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16 25 H 0.06 0.71 5.79 -51.93 -0.30 0.41 16 26 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 27 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 28 H 0.34 7.62 8.01 -39.29 -0.31 7.31 16 29 H 0.00 0.10 8.07 -51.93 -0.42 -0.32 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 265.40 15.07 4.00 4.00 Total: -1.00 -29.98 265.40 -6.16 -36.14 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.96 Total: 3.71 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 0.22 Total: -13.61 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.01 Total: -40.56 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.38 Total: -6.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.98 -6.16 -36.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694437346.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.579 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds