Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 C 1.50697 * 109.47221 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99977 * 245.70782 * 4 2 1 6 6 C 1.37876 * 120.00113 * 65.70475 * 4 2 1 7 7 N 1.31516 * 120.00053 * 195.34340 * 6 4 2 8 8 Si 1.86802 * 119.99754 * 15.34754 * 6 4 2 9 9 H 1.48508 * 109.46937 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47118 * 299.99602 * 8 6 4 11 11 H 1.48502 * 109.47325 * 59.99942 * 8 6 4 12 12 N 1.46906 * 109.47495 * 119.99430 * 2 1 3 13 13 C 1.46896 * 111.00193 * 176.04275 * 12 2 1 14 14 C 1.46894 * 111.00128 * 300.00518 * 12 2 1 15 15 H 1.09004 * 112.85075 * 42.90734 * 14 12 2 16 16 C 1.53783 * 113.61274 * 271.60433 * 14 12 2 17 17 C 1.53780 * 87.07872 * 220.01825 * 16 14 12 18 18 C 1.53780 * 87.08602 * 25.43058 * 17 16 14 19 19 H 1.08998 * 113.61226 * 89.11173 * 18 17 16 20 20 O 1.42897 * 113.69276 * 220.01048 * 18 17 16 21 21 H 1.09001 * 109.46757 * 307.47050 * 1 2 3 22 22 H 1.08994 * 109.46873 * 67.46948 * 1 2 3 23 23 H 1.08994 * 109.46698 * 187.47182 * 1 2 3 24 24 H 0.96993 * 120.00179 * 354.91170 * 7 6 4 25 25 H 1.08998 * 109.46821 * 52.07252 * 13 12 2 26 26 H 1.09001 * 109.46727 * 172.06643 * 13 12 2 27 27 H 1.08997 * 109.47271 * 292.06681 * 13 12 2 28 28 H 1.09004 * 113.61386 * 334.56286 * 16 14 12 29 29 H 1.08997 * 113.61615 * 105.47302 * 16 14 12 30 30 H 1.09004 * 113.61464 * 270.87760 * 17 16 14 31 31 H 1.09003 * 113.61444 * 139.97904 * 17 16 14 32 32 H 0.96700 * 113.99820 * 277.53039 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5752 -1.6392 -1.1339 6 6 1.7990 -0.1749 -2.4793 7 7 1.9589 -0.9168 -3.5533 8 14 1.2559 1.6047 -2.6457 9 1 1.0740 1.9344 -4.0823 10 1 -0.0284 1.7997 -1.9261 11 1 2.2909 2.4949 -2.0613 12 7 2.0198 -0.6924 1.1995 13 6 3.4852 -0.7945 1.1871 14 6 1.5488 -0.0263 2.4211 15 1 0.5014 0.2703 2.3645 16 6 2.4823 1.0932 2.9114 17 6 2.2076 0.5897 4.3382 18 6 1.9061 -0.7821 3.7118 19 1 2.7843 -1.4204 3.6151 20 8 0.7948 -1.4538 4.3082 21 1 -0.3633 0.6252 0.8156 22 1 -0.3633 0.3938 -0.9492 23 1 -0.3632 -1.0189 0.1336 24 1 2.3113 -1.8169 -3.4729 25 1 3.9166 0.1920 1.0176 26 1 3.8305 -1.1822 2.1455 27 1 3.7956 -1.4689 0.3891 28 1 3.5180 0.9674 2.5958 29 1 2.0993 2.0957 2.7209 30 1 1.3407 1.0559 4.8065 31 1 3.0890 0.5926 4.9795 32 1 1.0133 -1.9310 5.1203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704016525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = -17.281808 kcal Electronic energy + Delta-G solvation = -13518.954632 eV Core-core repulsion = 11287.711268 eV Total energy + Delta-G solvation = -2231.243364 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.62502 -36.09778 -34.19772 -32.18562 -29.77523 -26.21319 -24.52296 -24.23225 -23.11580 -19.80104 -18.59438 -17.39363 -17.36278 -15.41983 -15.11594 -14.27420 -13.98748 -13.49629 -13.02187 -12.49180 -12.25783 -11.87747 -11.69862 -11.62073 -11.43988 -11.04282 -10.80949 -10.58133 -10.31969 -10.03285 -9.73749 -9.66405 -9.54003 -8.76811 -8.25934 -7.27309 -6.41949 -4.01323 3.39329 3.42425 3.60810 4.36487 4.50439 4.69918 4.86031 5.01628 5.16700 5.26826 5.35475 5.67020 5.82900 5.92331 6.01791 6.08976 6.22266 6.32224 6.42539 6.54716 6.65637 6.70251 6.86182 6.99908 7.38677 7.78287 7.85679 8.05651 8.34830 8.48193 9.01378 9.66561 10.99108 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051276 B = 0.010433 C = 0.010128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.938243 B = 2683.247979 C = 2764.000109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.189 3.811 3 H -0.008 1.008 4 C -0.587 4.587 5 H 0.063 0.937 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 1.045 2.955 9 H -0.286 1.286 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.519 5.519 13 C 0.040 3.960 14 C 0.074 3.926 15 H 0.107 0.893 16 C -0.181 4.181 17 C -0.167 4.167 18 C 0.082 3.918 19 H 0.081 0.919 20 O -0.556 6.556 21 H 0.020 0.980 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 3.310 13.939 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.082 3.918 3 H 0.009 0.991 4 C -0.625 4.625 5 H 0.081 0.919 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.874 3.126 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.241 5.241 13 C -0.108 4.108 14 C -0.037 4.037 15 H 0.125 0.875 16 C -0.220 4.220 17 C -0.206 4.206 18 C 0.022 3.978 19 H 0.099 0.901 20 O -0.360 6.360 21 H 0.039 0.961 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.021 4.216 12.258 12.963 hybrid contribution 1.200 -0.577 1.648 2.119 sum 1.221 3.638 13.906 14.426 Atomic orbital electron populations 1.22288 0.98213 1.00587 0.99407 1.19576 0.91844 0.92016 0.88330 0.99105 1.22000 1.40118 1.09902 0.90522 0.91868 1.25688 0.95179 1.04700 0.92084 1.70847 1.41652 1.10862 1.31051 0.84062 0.77088 0.75538 0.75953 1.21149 1.19952 1.21267 1.61919 1.09481 1.51319 1.01350 1.22235 0.88477 0.99950 1.00185 1.23381 0.99786 0.90986 0.89504 0.87481 1.23470 1.01930 1.00122 0.96479 1.23473 1.01560 0.98581 0.96958 1.23755 0.89148 0.90809 0.94056 0.90093 1.86577 1.35686 1.70317 1.43422 0.96080 0.92351 0.92795 0.92275 0.96066 0.93860 0.90796 0.89241 0.91247 0.89723 0.91685 0.78545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.48 37.16 0.32 -3.11 16 2 C 0.19 4.65 1.62 -68.86 -0.11 4.53 16 3 H -0.01 -0.21 6.83 -51.93 -0.35 -0.57 16 4 C -0.59 -16.64 8.16 -34.44 -0.28 -16.92 16 5 H 0.06 1.94 6.90 -52.48 -0.36 1.57 16 6 C 0.03 0.82 5.32 -17.82 -0.09 0.72 16 7 N -0.91 -28.15 13.70 55.43 0.76 -27.40 16 8 Si 1.04 25.50 26.23 -169.99 -4.46 21.04 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.27 -6.18 5.67 56.52 0.32 -5.86 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.52 -11.27 4.74 -227.32 -1.08 -12.35 16 13 C 0.04 0.78 7.74 60.06 0.46 1.25 16 14 C 0.07 1.35 3.48 -66.90 -0.23 1.11 16 15 H 0.11 2.07 6.03 -51.93 -0.31 1.76 16 16 C -0.18 -2.78 7.32 -25.92 -0.19 -2.97 16 17 C -0.17 -2.17 7.91 -25.92 -0.21 -2.38 16 18 C 0.08 1.24 4.68 -25.92 -0.12 1.12 16 19 H 0.08 1.19 6.37 -51.93 -0.33 0.86 16 20 O -0.56 -8.34 13.67 -35.23 -0.48 -8.82 16 21 H 0.02 0.42 6.52 -51.93 -0.34 0.08 16 22 H 0.06 1.39 4.70 -51.93 -0.24 1.15 16 23 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 25 H 0.02 0.41 6.80 -51.93 -0.35 0.06 16 26 H 0.04 0.71 6.04 -51.93 -0.31 0.40 16 27 H 0.07 1.60 6.65 -51.93 -0.35 1.26 16 28 H 0.09 1.37 5.71 -51.93 -0.30 1.08 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.37 3.57 9.12 45.56 0.42 3.99 16 LS Contribution 245.89 15.07 3.71 3.71 Total: -1.00 -31.48 245.89 -5.77 -37.25 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -3.76 Total: 3.20 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -0.46 Total: -16.64 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: -0.32 Total: -39.74 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.48 Total: -8.82 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.46 Total: 21.04 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.48 -5.77 -37.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704016525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.973 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds