Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 C 1.50697 * 109.47221 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99977 * 245.70782 * 4 2 1 6 6 C 1.37876 * 120.00113 * 65.70475 * 4 2 1 7 7 N 1.31516 * 120.00053 * 195.34340 * 6 4 2 8 8 Si 1.86802 * 119.99754 * 15.34754 * 6 4 2 9 9 H 1.48508 * 109.46937 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47118 * 299.99602 * 8 6 4 11 11 H 1.48502 * 109.47325 * 59.99942 * 8 6 4 12 12 N 1.46906 * 109.47495 * 119.99430 * 2 1 3 13 13 C 1.46896 * 111.00193 * 176.04275 * 12 2 1 14 14 C 1.46894 * 111.00128 * 300.00518 * 12 2 1 15 15 H 1.09004 * 112.85075 * 42.90734 * 14 12 2 16 16 C 1.53783 * 113.61274 * 271.60433 * 14 12 2 17 17 C 1.53780 * 87.07872 * 220.01825 * 16 14 12 18 18 C 1.53780 * 87.08602 * 25.43058 * 17 16 14 19 19 H 1.08998 * 113.61226 * 89.11173 * 18 17 16 20 20 O 1.42897 * 113.69276 * 220.01048 * 18 17 16 21 21 H 1.09001 * 109.46757 * 307.47050 * 1 2 3 22 22 H 1.08994 * 109.46873 * 67.46948 * 1 2 3 23 23 H 1.08994 * 109.46698 * 187.47182 * 1 2 3 24 24 H 0.96993 * 120.00179 * 354.91170 * 7 6 4 25 25 H 1.08998 * 109.46821 * 52.07252 * 13 12 2 26 26 H 1.09001 * 109.46727 * 172.06643 * 13 12 2 27 27 H 1.08997 * 109.47271 * 292.06681 * 13 12 2 28 28 H 1.09004 * 113.61386 * 334.56286 * 16 14 12 29 29 H 1.08997 * 113.61615 * 105.47302 * 16 14 12 30 30 H 1.09004 * 113.61464 * 270.87760 * 17 16 14 31 31 H 1.09003 * 113.61444 * 139.97904 * 17 16 14 32 32 H 0.96700 * 113.99820 * 277.53039 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5752 -1.6392 -1.1339 6 6 1.7990 -0.1749 -2.4793 7 7 1.9589 -0.9168 -3.5533 8 14 1.2559 1.6047 -2.6457 9 1 1.0740 1.9344 -4.0823 10 1 -0.0284 1.7997 -1.9261 11 1 2.2909 2.4949 -2.0613 12 7 2.0198 -0.6924 1.1995 13 6 3.4852 -0.7945 1.1871 14 6 1.5488 -0.0263 2.4211 15 1 0.5014 0.2703 2.3645 16 6 2.4823 1.0932 2.9114 17 6 2.2076 0.5897 4.3382 18 6 1.9061 -0.7821 3.7118 19 1 2.7843 -1.4204 3.6151 20 8 0.7948 -1.4538 4.3082 21 1 -0.3633 0.6252 0.8156 22 1 -0.3633 0.3938 -0.9492 23 1 -0.3632 -1.0189 0.1336 24 1 2.3113 -1.8169 -3.4729 25 1 3.9166 0.1920 1.0176 26 1 3.8305 -1.1822 2.1455 27 1 3.7956 -1.4689 0.3891 28 1 3.5180 0.9674 2.5958 29 1 2.0993 2.0957 2.7209 30 1 1.3407 1.0559 4.8065 31 1 3.0890 0.5926 4.9795 32 1 1.0133 -1.9310 5.1203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704016525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = -42.996956 kcal Electronic energy + Delta-G solvation = -13520.069725 eV Core-core repulsion = 11287.711268 eV Total energy + Delta-G solvation = -2232.358457 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.95063 -37.61560 -35.65364 -34.16429 -31.60784 -27.88476 -26.15529 -25.68250 -24.61329 -21.55815 -19.98489 -19.50121 -18.59318 -16.88959 -16.71149 -15.75881 -15.54222 -15.17607 -14.53945 -14.23314 -13.86056 -13.64684 -13.44547 -12.89499 -12.73194 -12.69962 -12.31921 -12.25828 -12.05007 -11.91039 -11.49595 -10.99942 -10.89267 -10.75943 -10.44363 -8.93049 -8.73621 -6.33771 1.43782 1.50326 1.69876 2.47857 3.05527 3.10531 3.45657 3.71058 3.82379 3.97322 3.99948 4.38723 4.52670 4.56702 4.62830 4.76820 4.77642 4.84823 4.89277 5.00199 5.05829 5.13625 5.15149 5.41654 5.51317 5.85084 6.04960 6.25854 6.59816 6.74206 6.98572 7.43971 8.66124 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051276 B = 0.010433 C = 0.010128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.938243 B = 2683.247979 C = 2764.000109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.191 3.809 3 H -0.007 1.007 4 C -0.586 4.586 5 H 0.023 0.977 6 C -0.023 4.023 7 N -0.942 5.942 8 Si 1.082 2.918 9 H -0.289 1.289 10 H -0.242 1.242 11 H -0.267 1.267 12 N -0.539 5.539 13 C 0.046 3.954 14 C 0.052 3.948 15 H 0.095 0.905 16 C -0.178 4.178 17 C -0.144 4.144 18 C 0.086 3.914 19 H 0.086 0.914 20 O -0.576 6.576 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.250 0.750 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 5.057 16.441 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.083 3.917 3 H 0.011 0.989 4 C -0.624 4.624 5 H 0.042 0.958 6 C -0.221 4.221 7 N -0.578 5.578 8 Si 0.904 3.096 9 H -0.215 1.215 10 H -0.167 1.167 11 H -0.192 1.192 12 N -0.262 5.262 13 C -0.102 4.102 14 C -0.057 4.057 15 H 0.113 0.887 16 C -0.217 4.217 17 C -0.182 4.182 18 C 0.027 3.973 19 H 0.104 0.896 20 O -0.384 6.384 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.226 5.939 14.818 15.966 hybrid contribution 1.305 -1.242 0.942 2.033 sum 1.079 4.697 15.761 16.481 Atomic orbital electron populations 1.22169 0.97141 1.00347 1.00221 1.19402 0.92579 0.91559 0.88125 0.98923 1.22180 1.38989 1.08488 0.92728 0.95844 1.27135 0.94952 1.08173 0.91827 1.70982 1.44147 1.10492 1.32204 0.83615 0.78753 0.70935 0.76323 1.21470 1.16674 1.19209 1.61813 1.10400 1.52138 1.01808 1.22168 0.87754 0.99430 1.00886 1.23612 0.99713 0.93351 0.89052 0.88710 1.23442 1.01035 0.99271 0.97959 1.23347 1.02969 0.96055 0.95833 1.23669 0.89019 0.92033 0.92607 0.89637 1.86513 1.35982 1.70855 1.45001 0.93009 0.93035 0.94242 0.94060 0.95845 0.90357 0.94124 0.89215 0.90832 0.88924 0.88886 0.75825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.37 8.48 71.98 0.61 -5.76 16 2 C 0.19 9.26 1.62 44.17 0.07 9.33 16 3 H -0.01 -0.32 6.83 -2.39 -0.02 -0.33 16 4 C -0.59 -34.00 8.16 25.60 0.21 -33.79 16 5 H 0.02 1.51 6.90 -2.91 -0.02 1.49 16 6 C -0.02 -1.38 5.32 84.65 0.45 -0.93 16 7 N -0.94 -60.18 13.70 21.45 0.29 -59.89 16 8 Si 1.08 50.59 26.23 68.60 1.80 52.39 16 9 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.24 -10.09 5.67 99.48 0.56 -9.52 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 N -0.54 -22.97 4.74 -873.11 -4.14 -27.11 16 13 C 0.05 1.77 7.74 127.69 0.99 2.76 16 14 C 0.05 1.78 3.48 45.44 0.16 1.93 16 15 H 0.09 3.44 6.03 -2.38 -0.01 3.43 16 16 C -0.18 -4.86 7.32 31.12 0.23 -4.64 16 17 C -0.14 -3.09 7.91 31.12 0.25 -2.85 16 18 C 0.09 2.33 4.68 31.12 0.15 2.48 16 19 H 0.09 2.22 6.37 -2.39 -0.02 2.21 16 20 O -0.58 -15.54 13.67 -148.98 -2.04 -17.58 16 21 H 0.05 2.00 6.52 -2.39 -0.02 1.98 16 22 H 0.05 2.36 4.70 -2.39 -0.01 2.35 16 23 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 25 H 0.02 0.88 6.80 -2.39 -0.02 0.87 16 26 H 0.08 2.43 6.04 -2.39 -0.01 2.42 16 27 H 0.04 1.81 6.65 -2.39 -0.02 1.80 16 28 H 0.09 2.46 5.71 -2.38 -0.01 2.44 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.39 6.29 9.12 -74.06 -0.68 5.62 16 Total: -1.00 -69.31 245.89 -0.71 -70.03 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.26 Total: 13.63 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 3.11 Total: -31.47 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -3.84 Total: -87.00 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -2.04 Total: -17.58 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.80 Total: 52.39 kcal Total: -69.31 -0.71 -70.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704016525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.030 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds