Wall clock time and date at job start Mon Mar 30 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47463 * 2 1 4 4 C 1.50699 * 109.47114 * 240.00241 * 2 1 3 5 5 H 1.07997 * 120.00808 * 245.21700 * 4 2 1 6 6 C 1.37886 * 119.99692 * 65.21699 * 4 2 1 7 7 N 1.31511 * 120.00105 * 7.82360 * 6 4 2 8 8 Si 1.86801 * 119.99979 * 187.82436 * 6 4 2 9 9 H 1.48493 * 109.47374 * 94.98243 * 8 6 4 10 10 H 1.48495 * 109.47093 * 214.98637 * 8 6 4 11 11 H 1.48500 * 109.46819 * 334.98291 * 8 6 4 12 12 N 1.46904 * 109.47439 * 120.00560 * 2 1 3 13 13 C 1.46900 * 111.00161 * 176.04274 * 12 2 1 14 14 C 1.46899 * 110.99629 * 299.99882 * 12 2 1 15 15 H 1.08998 * 112.90865 * 319.95169 * 14 12 2 16 16 C 1.53786 * 113.61365 * 188.70337 * 14 12 2 17 17 C 1.53775 * 87.17437 * 220.06139 * 16 14 12 18 18 C 1.53784 * 87.08147 * 25.39155 * 17 16 14 19 19 H 1.09001 * 113.61072 * 219.93666 * 18 17 16 20 20 O 1.42893 * 113.61713 * 89.11761 * 18 17 16 21 21 H 1.08995 * 109.47066 * 182.88585 * 1 2 3 22 22 H 1.09007 * 109.47161 * 302.88317 * 1 2 3 23 23 H 1.08996 * 109.47322 * 62.87776 * 1 2 3 24 24 H 0.97002 * 119.99903 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47229 * 188.12955 * 13 12 2 26 26 H 1.08997 * 109.47349 * 308.13512 * 13 12 2 27 27 H 1.09000 * 109.47020 * 68.13431 * 13 12 2 28 28 H 1.09000 * 113.61515 * 105.46599 * 16 14 12 29 29 H 1.09002 * 113.60993 * 334.65459 * 16 14 12 30 30 H 1.09003 * 113.61670 * 139.93278 * 17 16 14 31 31 H 1.09000 * 113.61609 * 270.75819 * 17 16 14 32 32 H 0.96703 * 114.00321 * 79.50859 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5819 -1.6350 -1.1338 6 6 1.7901 -0.1798 -2.4799 7 7 1.2587 1.0178 -2.5941 8 14 2.2169 -1.1620 -4.0105 9 1 1.0143 -1.8965 -4.4787 10 1 2.6800 -0.2391 -5.0777 11 1 3.2959 -2.1311 -3.6917 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7947 1.1869 14 6 1.5487 -0.0266 2.4210 15 1 1.5711 1.0607 2.3471 16 6 2.1941 -0.5699 3.7068 17 6 0.8093 -0.4456 4.3638 18 6 0.2144 -0.5813 2.9521 19 1 -0.6367 0.0755 2.7721 20 8 -0.0364 -1.9335 2.5642 21 1 -0.3633 -1.0263 0.0517 22 1 -0.3634 0.5580 0.8631 23 1 -0.3634 0.4685 -0.9146 24 1 1.0887 1.3911 -3.4731 25 1 3.8118 -1.4338 2.0072 26 1 3.8114 -1.2240 0.2396 27 1 3.9195 0.1980 1.3047 28 1 2.9422 0.0970 4.1354 29 1 2.5447 -1.5982 3.6184 30 1 0.5625 -1.2776 5.0233 31 1 0.6296 0.5264 4.8232 32 1 -0.8506 -2.3037 2.9318 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:23 Heat of formation + Delta-G solvation = -17.000165 kcal Electronic energy + Delta-G solvation = -13605.409372 eV Core-core repulsion = 11374.178221 eV Total energy + Delta-G solvation = -2231.231151 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.22145 -35.63879 -33.90122 -32.13866 -29.15988 -26.12188 -24.40292 -24.24663 -22.91322 -19.71022 -18.88856 -16.55137 -16.22359 -15.14786 -14.93634 -14.40659 -13.81485 -13.33776 -12.65240 -12.45109 -12.02042 -11.84239 -11.49574 -11.18905 -10.93754 -10.72719 -10.56084 -10.51604 -10.01468 -9.98390 -9.87764 -9.67905 -9.17024 -8.67622 -8.35667 -6.97739 -5.95686 -3.95731 3.35861 3.42287 3.46293 4.46876 4.60370 4.93962 5.01082 5.17619 5.36659 5.41033 5.56547 5.88823 5.96976 6.08886 6.15361 6.34482 6.45543 6.64198 6.68497 6.89757 6.93572 7.19436 7.25631 7.57194 7.81276 7.92154 8.18319 8.30157 8.42484 8.75508 9.12172 9.67587 11.13544 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055210 B = 0.010201 C = 0.009727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.028414 B = 2744.222968 C = 2877.763713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.512 5.512 13 C 0.038 3.962 14 C 0.067 3.933 15 H 0.063 0.937 16 C -0.128 4.128 17 C -0.179 4.179 18 C 0.099 3.901 19 H 0.056 0.944 20 O -0.518 6.518 21 H 0.041 0.959 22 H 0.007 0.993 23 H 0.062 0.938 24 H 0.259 0.741 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.005 0.995 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 -1.875 10.763 10.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.236 5.236 13 C -0.110 4.110 14 C -0.043 4.043 15 H 0.081 0.919 16 C -0.166 4.166 17 C -0.217 4.217 18 C 0.039 3.961 19 H 0.074 0.926 20 O -0.319 6.319 21 H 0.061 0.939 22 H 0.026 0.974 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.023 0.977 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.878 -2.132 10.271 10.527 hybrid contribution -0.050 0.437 -0.564 0.715 sum -0.928 -1.695 9.707 9.897 Atomic orbital electron populations 1.21714 0.98015 0.99385 0.98745 1.19266 0.92122 0.92011 0.86182 0.98298 1.21148 1.34671 1.08035 0.89940 0.91897 1.24940 0.95612 0.94749 0.98971 1.69973 1.44916 1.15020 1.23477 0.86561 0.78589 0.79932 0.82790 1.20760 1.21503 1.19885 1.62244 1.08725 1.51436 1.01195 1.22183 0.88916 0.98105 1.01819 1.23176 0.94263 0.95603 0.91218 0.91934 1.22964 0.95711 1.01951 0.95973 1.23550 0.98757 1.01606 0.97830 1.22835 0.96567 0.84443 0.92264 0.92624 1.86771 1.45162 1.25936 1.74061 0.93942 0.97438 0.91867 0.93146 0.93842 0.90376 0.97651 0.92476 0.89275 0.91312 0.90219 0.79526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 8.26 37.15 0.31 -2.72 16 2 C 0.21 5.55 1.88 -68.87 -0.13 5.42 16 3 H 0.00 -0.02 8.10 -51.93 -0.42 -0.44 16 4 C -0.50 -14.19 7.61 -34.44 -0.26 -14.45 16 5 H 0.06 1.80 6.68 -52.49 -0.35 1.45 16 6 C 0.06 1.66 5.21 -17.82 -0.09 1.57 16 7 N -0.89 -26.35 12.06 55.43 0.67 -25.68 16 8 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 12 N -0.51 -11.68 4.21 -227.21 -0.96 -12.64 16 13 C 0.04 0.81 8.89 60.06 0.53 1.34 16 14 C 0.07 1.28 2.72 -66.81 -0.18 1.10 16 15 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 16 C -0.13 -2.01 6.53 -25.92 -0.17 -2.18 16 17 C -0.18 -2.42 7.91 -25.92 -0.21 -2.63 16 18 C 0.10 1.65 3.69 -25.83 -0.10 1.56 16 19 H 0.06 0.90 7.22 -51.93 -0.37 0.52 16 20 O -0.52 -9.02 13.01 -35.23 -0.46 -9.48 16 21 H 0.04 1.07 8.02 -51.93 -0.42 0.65 16 22 H 0.01 0.15 5.80 -51.93 -0.30 -0.15 16 23 H 0.06 1.72 6.75 -51.93 -0.35 1.37 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.04 0.80 6.76 -51.93 -0.35 0.45 16 26 H 0.08 1.77 6.08 -51.93 -0.32 1.46 16 27 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.48 7.37 -51.93 -0.38 1.10 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.36 4.38 9.12 45.56 0.42 4.80 16 LS Contribution 253.66 15.07 3.82 3.82 Total: -1.00 -31.12 253.66 -6.33 -37.45 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.09 Total: 0.61 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.29 Total: -11.00 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.29 Total: -38.32 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.46 Total: -9.48 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.12 -6.33 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.448 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds