Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47463 * 2 1 4 4 C 1.50699 * 109.47114 * 240.00241 * 2 1 3 5 5 H 1.07997 * 120.00808 * 245.21700 * 4 2 1 6 6 C 1.37886 * 119.99692 * 65.21699 * 4 2 1 7 7 N 1.31511 * 120.00105 * 7.82360 * 6 4 2 8 8 Si 1.86801 * 119.99979 * 187.82436 * 6 4 2 9 9 H 1.48493 * 109.47374 * 94.98243 * 8 6 4 10 10 H 1.48495 * 109.47093 * 214.98637 * 8 6 4 11 11 H 1.48500 * 109.46819 * 334.98291 * 8 6 4 12 12 N 1.46904 * 109.47439 * 120.00560 * 2 1 3 13 13 C 1.46900 * 111.00161 * 176.04274 * 12 2 1 14 14 C 1.46899 * 110.99629 * 299.99882 * 12 2 1 15 15 H 1.08998 * 112.90865 * 319.95169 * 14 12 2 16 16 C 1.53786 * 113.61365 * 188.70337 * 14 12 2 17 17 C 1.53775 * 87.17437 * 220.06139 * 16 14 12 18 18 C 1.53784 * 87.08147 * 25.39155 * 17 16 14 19 19 H 1.09001 * 113.61072 * 219.93666 * 18 17 16 20 20 O 1.42893 * 113.61713 * 89.11761 * 18 17 16 21 21 H 1.08995 * 109.47066 * 182.88585 * 1 2 3 22 22 H 1.09007 * 109.47161 * 302.88317 * 1 2 3 23 23 H 1.08996 * 109.47322 * 62.87776 * 1 2 3 24 24 H 0.97002 * 119.99903 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47229 * 188.12955 * 13 12 2 26 26 H 1.08997 * 109.47349 * 308.13512 * 13 12 2 27 27 H 1.09000 * 109.47020 * 68.13431 * 13 12 2 28 28 H 1.09000 * 113.61515 * 105.46599 * 16 14 12 29 29 H 1.09002 * 113.60993 * 334.65459 * 16 14 12 30 30 H 1.09003 * 113.61670 * 139.93278 * 17 16 14 31 31 H 1.09000 * 113.61609 * 270.75819 * 17 16 14 32 32 H 0.96703 * 114.00321 * 79.50859 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5819 -1.6350 -1.1338 6 6 1.7901 -0.1798 -2.4799 7 7 1.2587 1.0178 -2.5941 8 14 2.2169 -1.1620 -4.0105 9 1 1.0143 -1.8965 -4.4787 10 1 2.6800 -0.2391 -5.0777 11 1 3.2959 -2.1311 -3.6917 12 7 2.0197 -0.6926 1.1994 13 6 3.4851 -0.7947 1.1869 14 6 1.5487 -0.0266 2.4210 15 1 1.5711 1.0607 2.3471 16 6 2.1941 -0.5699 3.7068 17 6 0.8093 -0.4456 4.3638 18 6 0.2144 -0.5813 2.9521 19 1 -0.6367 0.0755 2.7721 20 8 -0.0364 -1.9335 2.5642 21 1 -0.3633 -1.0263 0.0517 22 1 -0.3634 0.5580 0.8631 23 1 -0.3634 0.4685 -0.9146 24 1 1.0887 1.3911 -3.4731 25 1 3.8118 -1.4338 2.0072 26 1 3.8114 -1.2240 0.2396 27 1 3.9195 0.1980 1.3047 28 1 2.9422 0.0970 4.1354 29 1 2.5447 -1.5982 3.6184 30 1 0.5625 -1.2776 5.0233 31 1 0.6296 0.5264 4.8232 32 1 -0.8506 -2.3037 2.9318 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704132910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = -40.591803 kcal Electronic energy + Delta-G solvation = -13606.432382 eV Core-core repulsion = 11374.178221 eV Total energy + Delta-G solvation = -2232.254161 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.62122 -37.35797 -35.39886 -34.08384 -31.13138 -27.94410 -26.24844 -25.58287 -24.55371 -21.56144 -20.30205 -18.33866 -17.88929 -16.90477 -16.43827 -16.05663 -15.55587 -14.96137 -14.44723 -14.04974 -13.75652 -13.34524 -13.09355 -12.98097 -12.76036 -12.58012 -12.33320 -12.07899 -12.00048 -11.76482 -11.43963 -11.33537 -10.78828 -10.53442 -10.31970 -8.80464 -8.13527 -6.21335 1.40222 1.42037 1.52535 2.42539 3.16519 3.30022 3.51942 3.73706 3.91735 4.03262 4.29827 4.49108 4.70906 4.73959 4.80625 4.88569 4.93507 5.05212 5.08541 5.10054 5.22874 5.39840 5.41645 5.52364 5.73841 5.79043 6.24744 6.44353 6.81899 6.95416 7.19519 7.46705 8.95196 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055210 B = 0.010201 C = 0.009727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.028414 B = 2744.222968 C = 2877.763713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.215 3.785 3 H -0.041 1.041 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.520 5.520 13 C 0.042 3.958 14 C 0.040 3.960 15 H 0.052 0.948 16 C -0.120 4.120 17 C -0.153 4.153 18 C 0.096 3.904 19 H 0.058 0.942 20 O -0.544 6.544 21 H 0.037 0.963 22 H 0.029 0.971 23 H 0.035 0.965 24 H 0.261 0.739 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.003 0.997 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -2.691 12.041 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.108 3.892 3 H -0.024 1.024 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.244 5.244 13 C -0.107 4.107 14 C -0.069 4.069 15 H 0.070 0.930 16 C -0.158 4.158 17 C -0.191 4.191 18 C 0.036 3.964 19 H 0.076 0.924 20 O -0.349 6.349 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.021 0.979 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.025 -2.959 11.576 11.992 hybrid contribution -0.003 0.705 -0.913 1.154 sum -1.028 -2.254 10.663 10.947 Atomic orbital electron populations 1.21467 0.97234 0.98982 0.98300 1.19061 0.92667 0.89870 0.87578 1.02390 1.21402 1.34912 1.07909 0.91274 0.92658 1.25731 0.95510 0.95624 1.01965 1.70089 1.45682 1.16315 1.24249 0.85541 0.78535 0.78577 0.78982 1.20170 1.20855 1.19262 1.62210 1.09435 1.51344 1.01373 1.22155 0.88379 0.98382 1.01738 1.23510 0.97272 0.95214 0.90890 0.93003 1.22910 0.97463 1.01469 0.93961 1.23437 0.95860 1.03653 0.96191 1.22833 0.95357 0.84188 0.94023 0.92423 1.86691 1.46938 1.26250 1.75033 0.94363 0.95202 0.94579 0.92988 0.90903 0.92639 0.97861 0.90840 0.90073 0.89202 0.88043 0.76933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.18 8.26 71.98 0.59 -4.58 16 2 C 0.22 11.62 1.88 44.17 0.08 11.70 16 3 H -0.04 -2.51 8.10 -2.39 -0.02 -2.53 16 4 C -0.52 -29.92 7.61 25.60 0.19 -29.73 16 5 H 0.06 3.22 6.68 -2.91 -0.02 3.20 16 6 C 0.01 0.58 5.21 84.66 0.44 1.02 16 7 N -0.92 -55.42 12.06 21.45 0.26 -55.16 16 8 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.52 -23.73 4.21 -872.77 -3.67 -27.40 16 13 C 0.04 1.76 8.89 127.69 1.13 2.90 16 14 C 0.04 1.50 2.72 45.50 0.12 1.62 16 15 H 0.05 2.03 8.06 -2.39 -0.02 2.01 16 16 C -0.12 -3.44 6.53 31.12 0.20 -3.24 16 17 C -0.15 -3.56 7.91 31.12 0.25 -3.32 16 18 C 0.10 2.98 3.69 31.18 0.12 3.10 16 19 H 0.06 1.74 7.22 -2.39 -0.02 1.72 16 20 O -0.54 -17.85 13.01 -148.98 -1.94 -19.79 16 21 H 0.04 1.93 8.02 -2.39 -0.02 1.91 16 22 H 0.03 1.33 5.80 -2.38 -0.01 1.32 16 23 H 0.04 1.99 6.75 -2.39 -0.02 1.98 16 24 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.07 2.60 6.76 -2.39 -0.02 2.59 16 26 H 0.05 2.56 6.08 -2.39 -0.01 2.54 16 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 2.47 7.37 -2.39 -0.02 2.46 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.38 8.37 9.12 -74.06 -0.68 7.70 16 Total: -1.00 -67.18 253.66 0.24 -66.95 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.42 Total: 8.58 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.14 Total: -20.52 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.41 Total: -82.56 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.94 Total: -19.79 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -67.18 0.24 -66.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.355 kcal (2) G-P(sol) polarization free energy of solvation -67.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds