Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46798 * 2 1 4 4 C 1.50704 * 109.46733 * 240.00240 * 2 1 3 5 5 H 1.08000 * 119.99765 * 239.99668 * 4 2 1 6 6 C 1.37868 * 120.00079 * 59.99961 * 4 2 1 7 7 N 1.31517 * 120.00350 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46972 * 59.99480 * 8 6 4 10 10 H 1.48497 * 109.47519 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47089 * 299.99752 * 8 6 4 12 12 N 1.46897 * 109.47362 * 120.00194 * 2 1 3 13 13 C 1.46892 * 111.00362 * 58.95206 * 12 2 1 14 14 C 1.46900 * 110.99697 * 294.99723 * 12 2 1 15 15 H 1.09000 * 112.84892 * 61.13414 * 14 12 2 16 16 C 1.53779 * 113.61318 * 192.32971 * 14 12 2 17 17 C 1.53780 * 87.08268 * 139.98365 * 16 14 12 18 18 C 1.53780 * 87.08041 * 334.56728 * 17 16 14 19 19 H 1.08998 * 113.61504 * 270.88697 * 18 17 16 20 20 O 1.42897 * 113.61363 * 139.98161 * 18 17 16 21 21 H 1.09006 * 109.47170 * 299.99725 * 1 2 3 22 22 H 1.08998 * 109.47632 * 59.99516 * 1 2 3 23 23 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00464 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47106 * 290.31781 * 13 12 2 26 26 H 1.09008 * 109.46832 * 50.30866 * 13 12 2 27 27 H 1.08995 * 109.47752 * 170.31215 * 13 12 2 28 28 H 1.09002 * 113.61374 * 254.52964 * 16 14 12 29 29 H 1.09003 * 113.61789 * 25.43327 * 16 14 12 30 30 H 1.08998 * 113.61313 * 89.11580 * 17 16 14 31 31 H 1.09003 * 113.61542 * 219.93272 * 17 16 14 32 32 H 0.96707 * 113.99964 * 82.50465 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8266 -0.4198 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6488 0.0392 2.4180 15 1 0.5701 0.1327 2.5437 16 6 2.3753 -0.4567 3.6794 17 6 2.4999 1.0194 4.0924 18 6 2.4089 1.3640 2.5965 19 1 3.3756 1.3840 2.0934 20 8 1.6155 2.5206 2.3229 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.7080 1.1609 -3.4843 25 1 0.4553 -2.0743 1.4367 26 1 1.7270 -2.5644 0.2919 27 1 2.0383 -2.6161 2.0437 28 1 1.7429 -1.0444 4.3449 29 1 3.3329 -0.9345 3.4724 30 1 1.6541 1.3822 4.6764 31 1 3.4617 1.2675 4.5413 32 1 2.0881 3.3570 2.4334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -22.904282 kcal Electronic energy + Delta-G solvation = -13549.357545 eV Core-core repulsion = 11317.870372 eV Total energy + Delta-G solvation = -2231.487173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.16248 -35.92541 -34.19632 -32.20548 -28.47235 -25.90982 -25.08344 -24.17636 -22.90740 -19.95263 -18.51899 -17.10332 -16.11497 -15.11098 -14.72949 -14.58302 -13.76040 -13.23654 -12.85208 -12.43331 -12.17249 -11.53892 -11.39111 -11.12666 -11.02864 -10.89421 -10.70747 -10.55400 -10.42723 -9.95664 -9.78522 -9.67858 -9.32169 -8.74359 -8.31055 -7.11105 -5.93090 -3.97512 3.35752 3.39957 3.42677 4.45058 4.59814 4.95775 5.08496 5.25179 5.36359 5.37693 5.48508 5.90786 6.07019 6.09880 6.15072 6.26708 6.39880 6.63024 6.71889 6.79914 6.96626 7.00057 7.29492 7.62716 7.80880 7.90391 8.11900 8.23883 8.48390 8.69335 9.08588 9.66807 11.13531 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048420 B = 0.010541 C = 0.009657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.130728 B = 2655.769389 C = 2898.680681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.043 0.957 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.528 5.528 13 C 0.036 3.964 14 C 0.069 3.931 15 H 0.063 0.937 16 C -0.130 4.130 17 C -0.171 4.171 18 C 0.091 3.909 19 H 0.087 0.913 20 O -0.556 6.556 21 H 0.009 0.991 22 H 0.086 0.914 23 H 0.025 0.975 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 -0.205 9.932 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.106 3.894 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.252 5.252 13 C -0.113 4.113 14 C -0.041 4.041 15 H 0.080 0.920 16 C -0.168 4.168 17 C -0.210 4.210 18 C 0.032 3.968 19 H 0.105 0.895 20 O -0.360 6.360 21 H 0.028 0.972 22 H 0.104 0.896 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.287 -0.564 9.628 9.912 hybrid contribution -0.253 0.009 -0.737 0.779 sum 2.034 -0.555 8.891 9.138 Atomic orbital electron populations 1.22343 1.00949 0.98816 1.00640 1.19255 0.89780 0.94775 0.85569 0.93886 1.21120 1.30647 1.12433 0.89894 0.92104 1.24932 0.95315 0.95152 0.98910 1.69903 1.36913 1.22996 1.23323 0.86614 0.79171 0.79602 0.82292 1.20435 1.21431 1.20297 1.62597 1.58825 1.01795 1.01946 1.22170 0.96355 0.91046 1.01694 1.23160 0.97257 0.92362 0.91287 0.91961 1.22752 1.01468 0.95588 0.96954 1.23517 1.01714 0.97638 0.98114 1.23446 0.95054 0.85362 0.92922 0.89478 1.86602 1.41324 1.15883 1.92210 0.97159 0.89553 0.95627 0.93049 0.96896 0.90495 0.93996 0.91772 0.89347 0.90036 0.91568 0.78524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 8.32 37.16 0.31 -4.04 16 2 C 0.21 5.56 2.27 -68.86 -0.16 5.40 16 3 H 0.04 1.25 7.52 -51.93 -0.39 0.86 16 4 C -0.50 -14.07 7.80 -34.44 -0.27 -14.34 16 5 H 0.06 1.69 6.82 -52.49 -0.36 1.33 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -26.13 11.32 55.43 0.63 -25.50 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.53 -11.72 4.68 -227.33 -1.06 -12.79 16 13 C 0.04 0.73 8.52 60.06 0.51 1.24 16 14 C 0.07 1.32 2.55 -66.90 -0.17 1.15 16 15 H 0.06 1.31 6.72 -51.93 -0.35 0.96 16 16 C -0.13 -1.96 7.19 -25.92 -0.19 -2.15 16 17 C -0.17 -2.39 7.91 -25.92 -0.21 -2.59 16 18 C 0.09 1.60 4.23 -25.92 -0.11 1.49 16 19 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 20 O -0.56 -10.00 13.67 -35.23 -0.48 -10.48 16 21 H 0.01 0.24 6.60 -51.93 -0.34 -0.11 16 22 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 23 H 0.02 0.63 6.61 -51.93 -0.34 0.29 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.01 0.26 6.83 -51.93 -0.35 -0.10 16 26 H 0.08 1.68 6.28 -51.92 -0.33 1.35 16 27 H 0.04 0.73 7.76 -51.93 -0.40 0.33 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.37 4.71 9.12 45.56 0.42 5.13 16 LS Contribution 253.96 15.07 3.83 3.83 Total: -1.00 -30.49 253.96 -6.50 -36.99 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.02 Total: 3.58 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.37 Total: -12.30 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.44 Total: -38.29 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.48 Total: -10.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.49 -6.50 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.085 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds