Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46798 * 2 1 4 4 C 1.50704 * 109.46733 * 240.00240 * 2 1 3 5 5 H 1.08000 * 119.99765 * 239.99668 * 4 2 1 6 6 C 1.37868 * 120.00079 * 59.99961 * 4 2 1 7 7 N 1.31517 * 120.00350 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46972 * 59.99480 * 8 6 4 10 10 H 1.48497 * 109.47519 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47089 * 299.99752 * 8 6 4 12 12 N 1.46897 * 109.47362 * 120.00194 * 2 1 3 13 13 C 1.46892 * 111.00362 * 58.95206 * 12 2 1 14 14 C 1.46900 * 110.99697 * 294.99723 * 12 2 1 15 15 H 1.09000 * 112.84892 * 61.13414 * 14 12 2 16 16 C 1.53779 * 113.61318 * 192.32971 * 14 12 2 17 17 C 1.53780 * 87.08268 * 139.98365 * 16 14 12 18 18 C 1.53780 * 87.08041 * 334.56728 * 17 16 14 19 19 H 1.08998 * 113.61504 * 270.88697 * 18 17 16 20 20 O 1.42897 * 113.61363 * 139.98161 * 18 17 16 21 21 H 1.09006 * 109.47170 * 299.99725 * 1 2 3 22 22 H 1.08998 * 109.47632 * 59.99516 * 1 2 3 23 23 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00464 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47106 * 290.31781 * 13 12 2 26 26 H 1.09008 * 109.46832 * 50.30866 * 13 12 2 27 27 H 1.08995 * 109.47752 * 170.31215 * 13 12 2 28 28 H 1.09002 * 113.61374 * 254.52964 * 16 14 12 29 29 H 1.09003 * 113.61789 * 25.43327 * 16 14 12 30 30 H 1.08998 * 113.61313 * 89.11580 * 17 16 14 31 31 H 1.09003 * 113.61542 * 219.93272 * 17 16 14 32 32 H 0.96707 * 113.99964 * 82.50465 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8266 -0.4198 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6488 0.0392 2.4180 15 1 0.5701 0.1327 2.5437 16 6 2.3753 -0.4567 3.6794 17 6 2.4999 1.0194 4.0924 18 6 2.4089 1.3640 2.5965 19 1 3.3756 1.3840 2.0934 20 8 1.6155 2.5206 2.3229 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.7080 1.1609 -3.4843 25 1 0.4553 -2.0743 1.4367 26 1 1.7270 -2.5644 0.2919 27 1 2.0383 -2.6161 2.0437 28 1 1.7429 -1.0444 4.3449 29 1 3.3329 -0.9345 3.4724 30 1 1.6541 1.3822 4.6764 31 1 3.4617 1.2675 4.5413 32 1 2.0881 3.3570 2.4334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704132917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -46.242679 kcal Electronic energy + Delta-G solvation = -13550.369574 eV Core-core repulsion = 11317.870372 eV Total energy + Delta-G solvation = -2232.499202 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.60256 -37.63855 -35.69632 -34.19101 -30.45194 -27.61986 -27.07856 -25.50729 -24.53198 -21.67551 -20.03561 -18.50948 -18.21846 -16.92680 -16.44977 -16.05447 -15.52014 -14.83185 -14.44236 -14.08408 -13.89052 -13.39557 -13.07242 -12.72758 -12.65990 -12.58502 -12.49794 -12.29526 -12.12659 -12.01335 -11.47142 -11.11674 -10.93309 -10.59964 -10.47917 -8.89582 -8.08662 -6.20957 1.42523 1.44639 1.52236 2.43399 3.18892 3.24766 3.66298 3.72602 3.86379 4.00715 4.14765 4.56606 4.69403 4.75768 4.77843 4.81131 4.90016 4.92828 5.04645 5.15550 5.19259 5.34017 5.44816 5.58473 5.71459 5.81083 6.21790 6.48080 6.77759 6.93628 6.98914 7.48217 8.97293 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048420 B = 0.010541 C = 0.009657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.130728 B = 2655.769389 C = 2898.680681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.221 3.779 3 H 0.005 0.995 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.008 3.992 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.533 5.533 13 C 0.039 3.961 14 C 0.048 3.952 15 H 0.042 0.958 16 C -0.115 4.115 17 C -0.147 4.147 18 C 0.081 3.919 19 H 0.076 0.924 20 O -0.582 6.582 21 H 0.015 0.985 22 H 0.058 0.942 23 H 0.028 0.972 24 H 0.260 0.740 25 H 0.010 0.990 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -1.094 11.077 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.113 3.887 3 H 0.023 0.977 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.257 5.257 13 C -0.109 4.109 14 C -0.061 4.061 15 H 0.060 0.940 16 C -0.153 4.153 17 C -0.185 4.185 18 C 0.022 3.978 19 H 0.094 0.906 20 O -0.389 6.389 21 H 0.034 0.966 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.198 -1.452 10.797 11.354 hybrid contribution -0.547 0.324 -1.059 1.235 sum 2.651 -1.128 9.739 10.156 Atomic orbital electron populations 1.22143 1.01103 0.98480 0.99432 1.18933 0.89432 0.93061 0.87227 0.97680 1.21410 1.30741 1.12523 0.90982 0.92224 1.25762 0.95426 0.95825 1.02023 1.70049 1.37861 1.24301 1.23964 0.85560 0.78763 0.78621 0.78359 1.19566 1.21106 1.19605 1.62539 1.58780 1.02569 1.01785 1.22171 0.96599 0.90204 1.01938 1.23451 0.96813 0.94195 0.91680 0.93993 1.22728 1.01262 0.96804 0.94463 1.23376 1.03614 0.96093 0.95382 1.23543 0.93949 0.84551 0.95723 0.90595 1.86543 1.42465 1.17243 1.92658 0.96634 0.92321 0.95337 0.93070 0.97168 0.92368 0.90544 0.89768 0.88789 0.89202 0.88711 0.76219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.06 8.32 71.98 0.60 -7.46 16 2 C 0.22 11.80 2.27 44.17 0.10 11.90 16 3 H 0.01 0.32 7.52 -2.39 -0.02 0.30 16 4 C -0.52 -29.36 7.80 25.60 0.20 -29.16 16 5 H 0.06 3.32 6.82 -2.91 -0.02 3.30 16 6 C 0.01 0.45 5.30 84.65 0.45 0.90 16 7 N -0.92 -55.06 11.32 21.44 0.24 -54.82 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.53 -23.55 4.68 -873.12 -4.09 -27.63 16 13 C 0.04 1.55 8.52 127.69 1.09 2.63 16 14 C 0.05 1.79 2.55 45.44 0.12 1.91 16 15 H 0.04 1.75 6.72 -2.39 -0.02 1.74 16 16 C -0.11 -3.12 7.19 31.12 0.22 -2.90 16 17 C -0.15 -3.61 7.91 31.12 0.25 -3.36 16 18 C 0.08 2.77 4.23 31.12 0.13 2.90 16 19 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 20 O -0.58 -20.86 13.67 -148.98 -2.04 -22.90 16 21 H 0.01 0.75 6.60 -2.38 -0.02 0.74 16 22 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 23 H 0.03 1.43 6.61 -2.39 -0.02 1.41 16 24 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.01 0.39 6.83 -2.39 -0.02 0.38 16 26 H 0.06 2.50 6.28 -2.38 -0.01 2.49 16 27 H 0.08 2.48 7.76 -2.39 -0.02 2.46 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.39 9.78 9.12 -74.05 -0.68 9.11 16 Total: -1.00 -65.93 253.96 -0.27 -66.20 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.43 Total: 15.18 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.15 Total: -22.64 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -3.84 Total: -82.45 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -2.04 Total: -22.90 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.93 -0.27 -66.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.959 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds