Wall clock time and date at job start Mon Mar 30 2020 02:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00020 * 2 1 4 4 H 1.09001 * 112.84914 * 341.19791 * 3 2 1 5 5 C 1.53783 * 113.69050 * 112.46892 * 3 2 1 6 6 C 1.53774 * 87.08151 * 89.12677 * 5 3 2 7 7 H 1.09000 * 113.69336 * 270.87159 * 6 5 3 8 8 N 1.46901 * 113.61448 * 139.97977 * 6 5 3 9 9 C 1.46905 * 110.99870 * 107.50193 * 8 6 5 10 10 H 1.09003 * 109.47224 * 325.00460 * 9 8 6 11 11 C 1.53002 * 109.47102 * 85.00132 * 9 8 6 12 12 C 1.50702 * 109.47206 * 205.00135 * 9 8 6 13 13 H 1.08003 * 119.99769 * 0.02562 * 12 9 8 14 14 C 1.37868 * 119.99983 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00448 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 120.00188 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47176 * 89.99381 * 16 14 12 18 18 H 1.48495 * 109.47439 * 209.99938 * 16 14 12 19 19 H 1.48500 * 109.46731 * 330.00116 * 16 14 12 20 20 C 1.53783 * 113.61536 * 210.00416 * 3 2 1 21 21 H 1.08994 * 109.47179 * 60.00019 * 1 2 3 22 22 H 1.08998 * 109.46698 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46576 * 299.99738 * 1 2 3 24 24 H 1.09002 * 113.61087 * 334.57745 * 5 3 2 25 25 H 1.09003 * 113.61375 * 203.67875 * 5 3 2 26 26 H 1.00901 * 111.00067 * 231.45369 * 8 6 5 27 27 H 1.09000 * 109.46959 * 59.99562 * 11 9 8 28 28 H 1.08999 * 109.47105 * 180.02562 * 11 9 8 29 29 H 1.08996 * 109.46950 * 299.99914 * 11 9 8 30 30 H 0.96997 * 120.00331 * 179.97438 * 15 14 12 31 31 H 1.08992 * 113.61655 * 156.25311 * 20 3 2 32 32 H 1.08995 * 113.61334 * 25.34391 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7532 1.6510 1.3013 6 6 4.0063 1.0352 0.6569 7 1 4.1107 -0.0347 0.8371 8 7 5.2394 1.7836 0.9353 9 6 6.0931 1.0570 1.8847 10 1 5.4682 0.5310 2.6064 11 6 6.9556 0.0469 1.1252 12 6 6.9836 2.0337 2.6087 13 1 6.9212 3.0887 2.3862 14 6 7.8778 1.5805 3.5551 15 7 7.9535 0.2958 3.8265 16 14 8.9811 2.7912 4.4532 17 1 8.2986 3.2634 5.6847 18 1 10.2555 2.1224 4.8190 19 1 9.2661 3.9503 3.5699 20 6 3.3755 1.3719 -0.7046 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.3928 1.0993 2.1696 25 1 2.8380 2.7222 1.4845 26 1 5.7389 1.9875 0.0827 27 1 7.5805 0.5728 0.4034 28 1 7.5887 -0.4926 1.8296 29 1 6.3115 -0.6596 0.6015 30 1 8.5829 -0.0231 4.4921 31 1 3.6304 2.3667 -1.0698 32 1 3.5175 0.5949 -1.4557 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706609241.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:52 Heat of formation + Delta-G solvation = -25.222739 kcal Electronic energy + Delta-G solvation = -12939.263006 eV Core-core repulsion = 10707.675298 eV Total energy + Delta-G solvation = -2231.587709 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.23321 -36.32818 -34.29400 -31.67440 -27.80517 -26.47821 -25.32756 -25.04221 -22.94762 -20.09075 -19.16180 -16.56070 -16.08355 -15.32356 -15.02890 -14.78825 -14.27242 -13.77060 -13.02454 -12.46833 -12.14825 -12.03638 -11.63843 -11.56447 -11.19476 -10.87208 -10.83155 -10.42518 -10.18296 -10.11604 -10.04610 -9.61965 -9.27526 -8.85947 -8.30359 -7.17518 -5.92523 -3.95723 3.36344 3.42159 3.46371 3.80307 4.48779 4.92546 5.00951 5.14590 5.32161 5.37633 5.39018 5.44525 5.60706 5.64131 5.84154 6.07163 6.21105 6.46502 6.62235 6.68921 6.77880 6.91500 7.19449 7.36746 7.49579 7.81115 7.96483 8.36589 8.62981 8.71033 9.11675 9.69403 11.14602 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066192 B = 0.007159 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.910988 B = 3910.265491 C = 3965.738032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.059 3.941 4 H 0.069 0.931 5 C -0.142 4.142 6 C 0.073 3.927 7 H 0.067 0.933 8 N -0.674 5.674 9 C 0.209 3.791 10 H 0.033 0.967 11 C -0.168 4.168 12 C -0.493 4.493 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.146 4.146 21 H 0.038 0.962 22 H 0.082 0.918 23 H 0.040 0.960 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.325 0.675 27 H 0.027 0.973 28 H 0.088 0.912 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.094 0.906 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 0.938 -7.342 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C 0.001 3.999 4 H 0.087 0.913 5 C -0.181 4.181 6 C -0.038 4.038 7 H 0.085 0.915 8 N -0.304 5.304 9 C 0.101 3.899 10 H 0.051 0.949 11 C -0.228 4.228 12 C -0.532 4.532 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.184 4.184 21 H 0.057 0.943 22 H 0.101 0.899 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.143 0.857 27 H 0.046 0.954 28 H 0.106 0.894 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.105 1.042 -6.727 13.025 hybrid contribution 0.780 -0.009 0.013 0.780 sum -10.325 1.033 -6.714 12.359 Atomic orbital electron populations 1.22756 0.81537 1.02389 0.99722 1.87895 1.19176 1.27188 1.94685 1.23050 0.94026 0.84331 0.98522 0.91304 1.23547 0.96270 1.01933 0.96339 1.22804 0.91287 0.96417 0.93291 0.91501 1.60921 1.06857 1.46642 1.15952 1.19220 0.90079 0.91079 0.89476 0.94881 1.22437 1.00711 0.99716 0.99914 1.21172 1.18363 0.93919 1.19765 0.92021 1.24962 0.97410 0.95188 0.97078 1.69893 1.37437 1.12872 1.33622 0.86514 0.79851 0.81113 0.79977 1.20819 1.21461 1.19971 1.23497 0.94766 1.02239 0.97922 0.94329 0.89914 0.94104 0.91743 0.88811 0.85720 0.95408 0.89364 0.97621 0.93137 0.88744 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.45 16 2 O -0.37 -5.60 10.64 -35.23 -0.37 -5.98 16 3 C 0.06 0.86 4.37 -25.92 -0.11 0.74 16 4 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 5 C -0.14 -2.42 7.71 -25.92 -0.20 -2.62 16 6 C 0.07 1.39 3.77 -66.90 -0.25 1.13 16 7 H 0.07 1.41 7.49 -51.93 -0.39 1.02 16 8 N -0.67 -14.71 6.29 -100.10 -0.63 -15.34 16 9 C 0.21 5.44 2.43 -68.86 -0.17 5.27 16 10 H 0.03 0.96 7.84 -51.93 -0.41 0.55 16 11 C -0.17 -4.20 8.93 37.16 0.33 -3.87 16 12 C -0.49 -13.97 8.84 -34.44 -0.30 -14.28 16 13 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 14 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 15 N -0.90 -26.33 11.32 55.43 0.63 -25.70 16 16 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.15 -2.22 7.48 -25.92 -0.19 -2.42 16 21 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 26 H 0.33 6.70 8.29 -39.29 -0.33 6.37 16 27 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.00 0.11 7.74 -51.93 -0.40 -0.29 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 265.32 15.07 4.00 4.00 Total: -1.00 -29.82 265.32 -6.47 -36.29 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.17 Total: 3.05 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 0.10 Total: -13.15 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.00 Total: -41.05 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.37 Total: -5.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.82 -6.47 -36.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706609241.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.065 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds