Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47219 * 2 1 4 4 N 1.46895 * 109.46627 * 119.99888 * 2 1 3 5 5 C 1.52995 * 109.46923 * 239.99562 * 2 1 3 6 6 O 1.42901 * 109.46822 * 175.00381 * 5 2 1 7 7 C 1.42904 * 113.99904 * 179.97438 * 6 5 2 8 8 C 1.53004 * 109.47230 * 179.97438 * 7 6 5 9 9 C 1.50697 * 115.54680 * 65.10760 * 8 7 6 10 10 H 1.07999 * 120.00368 * 266.11313 * 9 8 7 11 11 C 1.37877 * 119.99797 * 86.11547 * 9 8 7 12 12 N 1.31517 * 120.00162 * 353.70487 * 11 9 8 13 13 Si 1.86806 * 120.00269 * 173.70078 * 11 9 8 14 14 H 1.48498 * 109.46706 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47290 * 119.99884 * 13 11 9 16 16 H 1.48505 * 109.47108 * 240.00311 * 13 11 9 17 17 C 1.53000 * 117.49746 * 279.44398 * 8 7 6 18 18 C 1.52994 * 117.49863 * 210.78263 * 8 7 6 19 19 H 1.08992 * 109.47219 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47170 * 300.00977 * 1 2 3 21 21 H 1.09008 * 109.46694 * 60.00355 * 1 2 3 22 22 H 1.00900 * 111.00182 * 296.04303 * 4 2 1 23 23 H 1.00896 * 111.00415 * 60.00040 * 4 2 1 24 24 H 1.09001 * 109.47374 * 55.00378 * 5 2 1 25 25 H 1.09004 * 109.47240 * 295.00219 * 5 2 1 26 26 H 1.09000 * 109.47499 * 299.99777 * 7 6 5 27 27 H 1.09000 * 109.46855 * 59.99883 * 7 6 5 28 28 H 0.97002 * 120.00264 * 179.97438 * 12 11 9 29 29 H 1.08993 * 117.49803 * 359.97438 * 17 8 7 30 30 H 1.09001 * 117.49961 * 145.02095 * 17 8 7 31 31 H 1.09009 * 117.49870 * 214.97768 * 18 8 7 32 32 H 1.08996 * 117.50048 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0400 -0.7213 -1.2492 6 8 3.4642 -0.6206 -1.3093 7 6 4.0451 -1.2654 -2.4446 8 6 5.5650 -1.0939 -2.4063 9 6 6.2666 -1.7701 -1.2568 10 1 6.4737 -1.2192 -0.3512 11 6 6.6442 -3.0920 -1.3611 12 7 6.2843 -3.7978 -2.4109 13 14 7.6671 -3.8806 -0.0115 14 1 7.9374 -2.8809 1.0527 15 1 6.9237 -5.0290 0.5661 16 1 8.9528 -4.3589 -0.5803 17 6 6.1385 0.2358 -2.9004 18 6 6.3026 -1.0301 -3.7452 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5140 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.7502 -0.1989 2.0372 23 1 1.6961 -1.6479 1.2228 24 1 1.6054 -0.2619 -2.1369 25 1 1.7516 -1.7716 -1.2055 26 1 3.7983 -2.3270 -2.4252 27 1 3.6521 -0.8176 -3.3573 28 1 6.5503 -4.7277 -2.4845 29 1 5.4330 0.9881 -3.2530 30 1 7.0235 0.6212 -2.3942 31 1 7.2957 -1.4770 -3.7946 32 1 5.7052 -1.1108 -4.6533 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710354592.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = -51.230443 kcal Electronic energy + Delta-G solvation = -13012.567463 eV Core-core repulsion = 10779.851975 eV Total energy + Delta-G solvation = -2232.715487 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.36211 -37.87939 -36.01132 -33.94622 -30.01563 -28.48109 -27.34042 -25.99503 -22.89436 -21.82221 -20.94913 -18.14246 -17.60014 -17.04498 -16.68488 -16.20502 -15.53932 -15.39236 -14.57353 -14.18101 -13.97695 -13.57808 -13.10614 -13.07921 -12.86498 -12.70003 -12.42282 -12.29292 -12.03175 -11.62669 -11.33597 -10.84024 -10.41066 -10.26005 -9.95097 -9.45558 -8.08231 -6.16152 1.40567 1.42335 1.55053 2.46175 2.89596 3.21061 3.60764 3.69157 4.06484 4.24012 4.30115 4.42320 4.52111 4.57521 4.61291 4.64374 4.85867 4.90281 4.93301 5.01231 5.09906 5.23314 5.25531 5.63191 5.67024 5.81580 6.33536 6.45386 6.71172 6.71522 6.87129 7.50185 9.00954 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031594 B = 0.010479 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.023099 B = 2671.357246 C = 3218.864950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 H 0.078 0.922 4 N -0.852 5.852 5 C 0.059 3.941 6 O -0.381 6.381 7 C 0.121 3.879 8 C 0.009 3.991 9 C -0.494 4.494 10 H 0.042 0.958 11 C 0.022 3.978 12 N -0.910 5.910 13 Si 0.950 3.050 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.277 1.277 17 C -0.185 4.185 18 C -0.150 4.150 19 H 0.058 0.942 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.349 0.651 23 H 0.341 0.659 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.020 0.980 27 H 0.031 0.969 28 H 0.259 0.741 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.265 5.491 2.519 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 H 0.096 0.904 4 N -0.383 5.383 5 C -0.018 4.018 6 O -0.300 6.300 7 C 0.044 3.956 8 C 0.009 3.991 9 C -0.532 4.532 10 H 0.061 0.939 11 C -0.177 4.177 12 N -0.549 5.549 13 Si 0.776 3.224 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.203 1.203 17 C -0.222 4.222 18 C -0.188 4.188 19 H 0.077 0.923 20 H 0.093 0.907 21 H 0.090 0.910 22 H 0.163 0.837 23 H 0.154 0.846 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.402 5.551 2.288 11.155 hybrid contribution -0.527 -1.002 0.518 1.245 sum -9.929 4.549 2.806 11.276 Atomic orbital electron populations 1.22471 0.94412 1.02699 1.03600 1.21371 0.93288 0.98005 0.89153 0.90366 1.58615 1.68720 1.06528 1.04452 1.22692 0.82272 0.98857 0.98029 1.88005 1.19508 1.76262 1.46247 1.21834 0.93556 0.94106 0.86125 1.18904 0.89886 0.95946 0.94357 1.20607 1.36785 0.95983 0.99819 0.93941 1.25642 0.96850 0.97439 0.97782 1.70109 1.46086 1.08442 1.30235 0.85629 0.78757 0.78252 0.79751 1.19702 1.20676 1.20272 1.22952 1.02804 0.91281 1.05160 1.22441 1.00946 1.00914 0.94496 0.92259 0.90668 0.91029 0.83735 0.84610 0.92491 0.94878 0.96141 0.95080 0.93193 0.89230 0.90596 0.91799 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.48 71.98 0.68 -2.58 16 2 C 0.09 2.58 3.63 44.92 0.16 2.74 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 N -0.85 -24.69 9.18 -168.69 -1.55 -26.24 16 5 C 0.06 2.01 5.53 71.98 0.40 2.41 16 6 O -0.38 -17.50 10.22 -148.98 -1.52 -19.03 16 7 C 0.12 5.85 5.76 71.98 0.41 6.26 16 8 C 0.01 0.50 1.62 -52.93 -0.09 0.41 16 9 C -0.49 -29.02 8.77 25.60 0.22 -28.80 16 10 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 11 C 0.02 1.28 5.38 84.65 0.46 1.73 16 12 N -0.91 -53.49 12.88 21.45 0.28 -53.21 16 13 Si 0.95 45.65 29.54 68.60 2.03 47.68 16 14 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 C -0.18 -8.43 9.96 30.62 0.30 -8.13 16 18 C -0.15 -7.30 9.37 30.62 0.29 -7.01 16 19 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 20 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.35 8.00 9.07 -89.69 -0.81 7.18 16 23 H 0.34 9.30 9.00 -89.70 -0.81 8.49 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 25 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.03 1.35 8.09 -2.39 -0.02 1.33 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 30 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.06 3.31 8.14 -2.38 -0.02 3.29 16 32 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -65.66 274.49 1.55 -64.10 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.53 Total: 19.65 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 2.84 Total: -32.95 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -1.27 Total: -79.45 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -1.52 Total: -19.03 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -65.66 1.55 -64.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710354592.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.874 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds