Wall clock time and date at job start Mon Mar 30 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47633 * 2 1 4 4 C 1.53001 * 109.47329 * 240.00045 * 2 1 3 5 5 N 1.46496 * 109.47095 * 65.00497 * 4 2 1 6 6 C 1.36939 * 119.99997 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00163 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99757 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00314 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99908 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47041 * 89.99911 * 10 8 6 12 12 H 1.48500 * 109.47460 * 210.00076 * 10 8 6 13 13 H 1.48500 * 109.47058 * 330.00220 * 10 8 6 14 14 C 1.53004 * 109.46987 * 120.00258 * 2 1 3 15 15 H 1.09002 * 110.33108 * 60.69955 * 14 2 1 16 16 C 1.54483 * 110.37211 * 298.44867 * 14 2 1 17 17 C 1.54507 * 104.06211 * 217.07935 * 16 14 2 18 18 C 1.54477 * 104.06510 * 359.97438 * 17 16 14 19 19 O 1.44428 * 110.37485 * 182.94986 * 14 2 1 20 20 H 1.08999 * 109.46884 * 59.99805 * 1 2 3 21 21 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47108 * 300.00292 * 1 2 3 23 23 H 1.09007 * 109.47201 * 185.00109 * 4 2 1 24 24 H 1.08995 * 109.47157 * 304.99843 * 4 2 1 25 25 H 0.97005 * 120.00195 * 359.97438 * 5 4 2 26 26 H 0.96994 * 120.00136 * 180.02562 * 9 8 6 27 27 H 1.09005 * 110.50990 * 335.72659 * 16 14 2 28 28 H 1.09001 * 110.51072 * 98.43272 * 16 14 2 29 29 H 1.09000 * 110.50930 * 118.64837 * 17 16 14 30 30 H 1.09000 * 110.50918 * 241.21758 * 17 16 14 31 31 H 1.08996 * 110.37125 * 142.80919 * 18 17 16 32 32 H 1.08999 * 110.37542 * 265.14907 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6526 0.0354 -2.4423 6 6 2.0013 -0.4207 -3.6856 7 1 2.5622 -1.3380 -3.7865 8 6 1.6337 0.2960 -4.8161 9 7 0.9496 1.4137 -4.6932 10 14 2.1099 -0.3258 -6.5119 11 1 1.0401 -1.2149 -7.0316 12 1 2.2850 0.8275 -7.4310 13 1 3.3833 -1.0843 -6.4214 14 6 2.0399 -0.7213 1.2492 15 1 1.6946 -1.7552 1.2571 16 6 1.5688 0.0129 2.5242 17 6 2.7639 -0.1159 3.4949 18 6 3.8155 -0.9131 2.6919 19 8 3.4824 -0.6727 1.3044 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.1264 -0.7995 -1.2056 24 1 1.6055 -1.7198 -1.2952 25 1 1.1484 0.8592 -2.3518 26 1 0.6924 1.9143 -5.4831 27 1 1.3639 1.0613 2.3075 28 1 0.6853 -0.4719 2.9396 29 1 3.1499 0.8689 3.7582 30 1 2.4707 -0.6622 4.3913 31 1 4.8181 -0.5453 2.9098 32 1 3.7423 -1.9762 2.9214 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720516522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:19 Heat of formation + Delta-G solvation = -50.257836 kcal Electronic energy + Delta-G solvation = -12971.499018 eV Core-core repulsion = 10738.825706 eV Total energy + Delta-G solvation = -2232.673312 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.40413 -35.67293 -33.03255 -31.91205 -30.19863 -27.62355 -25.65805 -23.48875 -22.16391 -20.87173 -19.73134 -17.11276 -16.23024 -15.52926 -15.39557 -14.51814 -13.78698 -13.55281 -13.28521 -13.04808 -12.46744 -12.12203 -11.79178 -11.60379 -11.27170 -10.99998 -10.84498 -10.78208 -10.55128 -10.33018 -10.21026 -9.83938 -9.57815 -9.49610 -8.76976 -6.80172 -5.67724 -2.94930 3.49607 3.54314 3.56608 4.04384 4.62066 4.69168 4.79722 4.97203 5.14707 5.32314 5.51094 5.55272 5.64027 5.67554 5.76548 5.82169 5.90609 5.94917 6.03350 6.12381 6.33689 6.48060 6.52002 6.73933 6.96126 7.03263 7.15428 7.79362 8.52126 9.62725 10.22678 10.57732 11.55738 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.067954 B = 0.007130 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.941576 B = 3926.292182 C = 4175.966480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.732 5.732 6 C -0.234 4.234 7 H 0.070 0.930 8 C -0.017 4.017 9 N -0.937 5.937 10 Si 0.907 3.093 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.083 3.917 15 H 0.066 0.934 16 C -0.149 4.149 17 C -0.156 4.156 18 C 0.042 3.958 19 O -0.364 6.364 20 H 0.071 0.929 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.027 0.973 24 H 0.015 0.985 25 H 0.383 0.617 26 H 0.254 0.746 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -3.441 16.067 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.377 5.377 6 C -0.365 4.365 7 H 0.088 0.912 8 C -0.213 4.213 9 N -0.586 5.586 10 Si 0.738 3.262 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.025 3.975 15 H 0.084 0.916 16 C -0.187 4.187 17 C -0.193 4.193 18 C -0.035 4.035 19 O -0.283 6.283 20 H 0.090 0.910 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.217 0.783 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.375 -3.503 15.751 16.194 hybrid contribution -0.050 -0.086 -0.713 0.720 sum 1.325 -3.589 15.038 15.517 Atomic orbital electron populations 1.21753 0.94376 1.01741 1.01862 1.21357 0.95817 1.00318 0.93624 0.90537 1.20639 0.97078 0.93661 0.85410 1.42386 1.66845 1.27716 1.00731 1.19269 1.28209 1.05225 0.83802 0.91246 1.24722 1.01310 0.97475 0.97767 1.69658 1.43911 1.16718 1.28320 0.86181 0.77990 0.77464 0.84555 1.21821 1.21833 1.20801 1.23042 0.80944 0.98568 0.94929 0.91606 1.23004 0.98073 1.02196 0.95413 1.22935 0.96335 1.01282 0.98791 1.23401 0.98958 0.98719 0.82454 1.89295 1.21248 1.92902 1.24853 0.90978 0.93001 0.93527 0.95522 0.96686 0.78330 0.93634 0.90446 0.90787 0.90914 0.90974 0.89492 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.86 37.16 0.33 -1.93 16 2 C -0.09 -1.64 2.10 -90.62 -0.19 -1.83 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.16 3.54 5.60 -4.04 -0.02 3.52 16 5 N -0.73 -19.68 5.33 -59.91 -0.32 -20.00 16 6 C -0.23 -6.89 9.99 -15.06 -0.15 -7.04 16 7 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 8 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 9 N -0.94 -29.24 13.06 55.49 0.72 -28.51 16 10 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.08 1.24 2.80 -25.95 -0.07 1.17 16 15 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.15 -1.75 5.57 -25.16 -0.14 -1.89 16 17 C -0.16 -1.58 7.09 -25.17 -0.18 -1.76 16 18 C 0.04 0.49 7.63 37.93 0.29 0.78 16 19 O -0.36 -5.96 10.79 -35.23 -0.38 -6.34 16 20 H 0.07 1.34 7.18 -51.93 -0.37 0.97 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 23 H 0.03 0.63 7.67 -51.92 -0.40 0.23 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.38 10.64 6.85 -40.82 -0.28 10.36 16 26 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.08 0.93 7.74 -51.93 -0.40 0.53 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 261.25 15.07 3.94 3.94 Total: -1.00 -32.11 261.25 -6.47 -38.58 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.18 Total: 3.77 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.23 Total: -9.58 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.41 Total: -48.51 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.38 Total: -6.34 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.11 -6.47 -38.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720516522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.674 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds