Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99615 * 2 1 4 4 H 1.09000 * 112.91189 * 18.74653 * 3 2 1 5 5 C 1.53962 * 113.61256 * 247.41870 * 3 2 1 6 6 C 1.53782 * 87.11063 * 270.84305 * 5 3 2 7 7 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 8 8 H 1.08993 * 113.61265 * 270.80112 * 7 6 5 9 9 N 1.46906 * 113.61285 * 139.98103 * 7 6 5 10 10 C 1.46896 * 110.99756 * 105.86380 * 9 7 6 11 11 H 1.08996 * 109.47253 * 35.00259 * 10 9 7 12 12 C 1.52997 * 109.47250 * 274.99739 * 10 9 7 13 13 C 1.50707 * 109.47021 * 154.99851 * 10 9 7 14 14 H 1.08001 * 119.99710 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00187 * 179.97438 * 13 10 9 16 16 N 1.31519 * 119.99529 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 119.99963 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47473 * 60.00233 * 17 15 13 19 19 H 1.48508 * 109.46947 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47327 * 299.99951 * 17 15 13 21 21 H 1.09003 * 109.47300 * 60.00456 * 1 2 3 22 22 H 1.09004 * 109.47326 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47564 * 300.00144 * 1 2 3 24 24 H 1.08997 * 113.53543 * 156.28979 * 5 3 2 25 25 H 1.08998 * 113.73879 * 25.42577 * 5 3 2 26 26 H 1.09001 * 113.61250 * 220.08565 * 6 5 3 27 27 H 1.09007 * 113.61246 * 89.18971 * 6 5 3 28 28 H 1.00903 * 110.99376 * 229.81715 * 9 7 6 29 29 H 1.08999 * 109.47067 * 60.00155 * 12 10 9 30 30 H 1.08997 * 109.47635 * 180.02562 * 12 10 9 31 31 H 1.09010 * 109.47241 * 300.00342 * 12 10 9 32 32 H 0.97007 * 119.99384 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3141 2.0798 0.3227 5 6 2.7558 1.6486 -1.3026 6 6 4.0084 1.0344 -0.6556 7 6 3.3754 1.3721 0.7046 8 1 3.6303 2.3669 1.0697 9 7 3.5661 0.3260 1.7183 10 6 4.5697 0.7320 2.7112 11 1 4.4973 1.8059 2.8828 12 6 5.9679 0.3915 2.1917 13 6 4.3220 -0.0011 4.0044 14 1 3.5009 -0.6985 4.0811 15 6 5.1436 0.2184 5.0897 16 7 6.1438 1.0673 4.9960 17 14 4.8369 -0.6908 6.6923 18 1 4.9354 -2.1539 6.4581 19 1 5.8522 -0.2813 7.6958 20 1 3.4800 -0.3605 7.1971 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.8400 2.7196 -1.4867 25 1 2.3978 1.0966 -2.1716 26 1 4.9233 1.5900 -0.8616 27 1 4.1125 -0.0358 -0.8353 28 1 2.6918 0.0903 2.1633 29 1 6.1471 0.9217 1.2564 30 1 6.7126 0.6923 2.9286 31 1 6.0402 -0.6826 2.0201 32 1 6.7216 1.2220 5.7597 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724221175.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = -23.647554 kcal Electronic energy + Delta-G solvation = -13170.143678 eV Core-core repulsion = 10938.624275 eV Total energy + Delta-G solvation = -2231.519404 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.20554 -35.90458 -34.35897 -31.71634 -27.97744 -26.63815 -25.18892 -24.32370 -23.31068 -19.74968 -19.10961 -16.60615 -16.32739 -15.11498 -15.02958 -14.62723 -14.00733 -13.57877 -13.34799 -12.66480 -12.43857 -11.85486 -11.41324 -11.17122 -11.03983 -10.80048 -10.69557 -10.49586 -10.19186 -10.09440 -9.97191 -9.60928 -9.14314 -8.69359 -8.40462 -7.13278 -5.96903 -4.02950 3.34264 3.38356 3.41712 3.92106 4.44840 4.93818 5.02868 5.20718 5.33539 5.43735 5.50363 5.51002 5.67194 5.73890 5.79305 6.04375 6.08689 6.43275 6.68397 6.80150 6.98809 7.25280 7.33302 7.46386 7.65029 7.85857 7.99439 8.36370 8.53907 8.80085 9.10027 9.62723 11.09245 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045965 B = 0.009081 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.013371 B = 3082.515085 C = 3538.061605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.350 6.350 3 C 0.058 3.942 4 H 0.063 0.937 5 C -0.163 4.163 6 C -0.118 4.118 7 C 0.067 3.933 8 H 0.069 0.931 9 N -0.666 5.666 10 C 0.209 3.791 11 H -0.002 1.002 12 C -0.122 4.122 13 C -0.517 4.517 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.034 0.966 22 H 0.083 0.917 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.335 0.665 29 H 0.005 0.995 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 1.508 -9.091 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C -0.001 4.001 4 H 0.081 0.919 5 C -0.201 4.201 6 C -0.156 4.156 7 C -0.045 4.045 8 H 0.087 0.913 9 N -0.298 5.298 10 C 0.101 3.899 11 H 0.016 0.984 12 C -0.180 4.180 13 C -0.555 4.555 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.204 1.204 21 H 0.053 0.947 22 H 0.102 0.898 23 H 0.058 0.942 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.154 0.846 29 H 0.024 0.976 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.209 1.052 -9.335 11.841 hybrid contribution -0.785 0.474 1.386 1.662 sum -7.994 1.526 -7.949 11.376 Atomic orbital electron populations 1.22782 0.82050 1.02418 0.99407 1.87993 1.18452 1.25932 1.94351 1.23499 0.94799 0.84904 0.96940 0.91890 1.23362 0.98769 1.00533 0.97430 1.22953 0.95662 1.01469 0.95556 1.23296 0.92473 0.95126 0.93571 0.91294 1.60667 1.13269 1.38414 1.17405 1.19202 0.88746 0.93786 0.88135 0.98418 1.21687 1.00161 0.98648 0.97545 1.21274 1.13829 1.24824 0.95603 0.92329 1.24923 0.95068 0.95273 0.98807 1.69901 1.17255 1.35181 1.30707 0.86596 0.77743 0.80260 0.82982 1.20209 1.21344 1.20405 0.94711 0.89820 0.94218 0.90085 0.91251 0.92438 0.89336 0.84581 0.97620 0.90367 0.95098 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.85 101.05 1.10 1.47 16 2 O -0.35 -5.77 9.87 -35.23 -0.35 -6.12 16 3 C 0.06 0.91 4.18 -25.82 -0.11 0.80 16 4 H 0.06 0.89 7.87 -51.93 -0.41 0.48 16 5 C -0.16 -2.28 7.92 -25.82 -0.20 -2.48 16 6 C -0.12 -2.01 7.69 -25.92 -0.20 -2.21 16 7 C 0.07 1.27 3.89 -66.89 -0.26 1.01 16 8 H 0.07 1.34 7.49 -51.93 -0.39 0.96 16 9 N -0.67 -15.10 6.06 -100.10 -0.61 -15.70 16 10 C 0.21 5.49 2.60 -68.86 -0.18 5.31 16 11 H 0.00 -0.05 7.47 -51.93 -0.39 -0.44 16 12 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 13 C -0.52 -14.61 8.59 -34.44 -0.30 -14.91 16 14 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -26.01 11.32 55.43 0.63 -25.38 16 17 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 28 H 0.34 7.62 7.66 -39.29 -0.30 7.32 16 29 H 0.00 0.11 7.94 -51.93 -0.41 -0.30 16 30 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 31 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 263.88 15.07 3.98 3.98 Total: -1.00 -29.71 263.88 -6.41 -36.11 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.13 Total: 2.64 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 0.10 Total: -12.21 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.02 Total: -41.09 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.35 Total: -6.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.71 -6.41 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724221175.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.467 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds