Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99615 * 2 1 4 4 H 1.09000 * 112.91189 * 18.74653 * 3 2 1 5 5 C 1.53962 * 113.61256 * 247.41870 * 3 2 1 6 6 C 1.53782 * 87.11063 * 270.84305 * 5 3 2 7 7 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 8 8 H 1.08993 * 113.61265 * 270.80112 * 7 6 5 9 9 N 1.46906 * 113.61285 * 139.98103 * 7 6 5 10 10 C 1.46896 * 110.99756 * 105.86380 * 9 7 6 11 11 H 1.08996 * 109.47253 * 35.00259 * 10 9 7 12 12 C 1.52997 * 109.47250 * 274.99739 * 10 9 7 13 13 C 1.50707 * 109.47021 * 154.99851 * 10 9 7 14 14 H 1.08001 * 119.99710 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00187 * 179.97438 * 13 10 9 16 16 N 1.31519 * 119.99529 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 119.99963 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47473 * 60.00233 * 17 15 13 19 19 H 1.48508 * 109.46947 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47327 * 299.99951 * 17 15 13 21 21 H 1.09003 * 109.47300 * 60.00456 * 1 2 3 22 22 H 1.09004 * 109.47326 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47564 * 300.00144 * 1 2 3 24 24 H 1.08997 * 113.53543 * 156.28979 * 5 3 2 25 25 H 1.08998 * 113.73879 * 25.42577 * 5 3 2 26 26 H 1.09001 * 113.61250 * 220.08565 * 6 5 3 27 27 H 1.09007 * 113.61246 * 89.18971 * 6 5 3 28 28 H 1.00903 * 110.99376 * 229.81715 * 9 7 6 29 29 H 1.08999 * 109.47067 * 60.00155 * 12 10 9 30 30 H 1.08997 * 109.47635 * 180.02562 * 12 10 9 31 31 H 1.09010 * 109.47241 * 300.00342 * 12 10 9 32 32 H 0.97007 * 119.99384 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3141 2.0798 0.3227 5 6 2.7558 1.6486 -1.3026 6 6 4.0084 1.0344 -0.6556 7 6 3.3754 1.3721 0.7046 8 1 3.6303 2.3669 1.0697 9 7 3.5661 0.3260 1.7183 10 6 4.5697 0.7320 2.7112 11 1 4.4973 1.8059 2.8828 12 6 5.9679 0.3915 2.1917 13 6 4.3220 -0.0011 4.0044 14 1 3.5009 -0.6985 4.0811 15 6 5.1436 0.2184 5.0897 16 7 6.1438 1.0673 4.9960 17 14 4.8369 -0.6908 6.6923 18 1 4.9354 -2.1539 6.4581 19 1 5.8522 -0.2813 7.6958 20 1 3.4800 -0.3605 7.1971 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.8400 2.7196 -1.4867 25 1 2.3978 1.0966 -2.1716 26 1 4.9233 1.5900 -0.8616 27 1 4.1125 -0.0358 -0.8353 28 1 2.6918 0.0903 2.1633 29 1 6.1471 0.9217 1.2564 30 1 6.7126 0.6923 2.9286 31 1 6.0402 -0.6826 2.0201 32 1 6.7216 1.2220 5.7597 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724221175.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = -44.102375 kcal Electronic energy + Delta-G solvation = -13171.030666 eV Core-core repulsion = 10938.624275 eV Total energy + Delta-G solvation = -2232.406391 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.51922 -37.39679 -36.08370 -33.71880 -29.89913 -27.67195 -27.30028 -25.60853 -24.80464 -21.76194 -20.44590 -18.58565 -17.57317 -16.86669 -16.55914 -16.09946 -15.42778 -15.29031 -14.71907 -14.27481 -14.07670 -13.47436 -13.01381 -12.75262 -12.74133 -12.50078 -12.48339 -12.20748 -12.14233 -11.75911 -11.54936 -11.05608 -10.85689 -10.55325 -10.29559 -8.96872 -8.12722 -6.27230 1.41159 1.43898 1.51471 2.41536 2.77964 3.14944 3.67819 3.75741 3.86759 4.09835 4.18727 4.50154 4.58819 4.60876 4.69742 4.85064 4.88654 4.94671 5.09092 5.15721 5.21711 5.37733 5.40799 5.53669 5.69652 5.88084 6.23336 6.37292 6.54926 6.86429 7.04775 7.43336 8.92579 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045965 B = 0.009081 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.013371 B = 3082.515085 C = 3538.061605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.065 3.935 4 H 0.082 0.918 5 C -0.140 4.140 6 C -0.120 4.120 7 C 0.044 3.956 8 H 0.060 0.940 9 N -0.666 5.666 10 C 0.214 3.786 11 H -0.032 1.032 12 C -0.109 4.109 13 C -0.539 4.539 14 H 0.056 0.944 15 C 0.012 3.988 16 N -0.918 5.918 17 Si 0.964 3.036 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.270 1.270 21 H 0.056 0.944 22 H 0.094 0.906 23 H 0.043 0.957 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.332 0.668 29 H 0.022 0.978 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 1.448 -9.665 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.298 6.298 3 C 0.006 3.994 4 H 0.100 0.900 5 C -0.178 4.178 6 C -0.158 4.158 7 C -0.067 4.067 8 H 0.078 0.922 9 N -0.297 5.297 10 C 0.106 3.894 11 H -0.015 1.015 12 C -0.167 4.167 13 C -0.578 4.578 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.789 3.211 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.195 1.195 21 H 0.074 0.926 22 H 0.113 0.887 23 H 0.061 0.939 24 H 0.124 0.876 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.441 0.994 -9.932 13.072 hybrid contribution -0.424 0.505 1.531 1.667 sum -8.866 1.499 -8.401 12.305 Atomic orbital electron populations 1.22989 0.79865 1.03656 1.00620 1.87945 1.20907 1.26392 1.94510 1.23435 0.93620 0.85378 0.97002 0.90013 1.23284 0.95711 1.01955 0.96863 1.22903 0.97402 1.00765 0.94779 1.23541 0.96257 0.93681 0.93171 0.92179 1.60609 1.12440 1.39976 1.16694 1.19009 0.89938 0.91731 0.88753 1.01457 1.21498 0.99510 0.98109 0.97588 1.21588 1.14071 1.25204 0.96918 0.92599 1.25756 0.94716 0.95990 1.02233 1.70028 1.17869 1.36154 1.31709 0.85534 0.77988 0.78921 0.78700 1.19786 1.20714 1.19484 0.92551 0.88706 0.93868 0.87584 0.89818 0.92130 0.91055 0.85009 0.95932 0.92595 0.95840 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.85 113.37 1.23 1.78 16 2 O -0.38 -11.86 9.87 -148.98 -1.47 -13.33 16 3 C 0.06 1.90 4.18 31.18 0.13 2.03 16 4 H 0.08 2.09 7.87 -2.39 -0.02 2.07 16 5 C -0.14 -3.52 7.92 31.18 0.25 -3.27 16 6 C -0.12 -3.95 7.69 31.12 0.24 -3.71 16 7 C 0.04 1.66 3.89 45.44 0.18 1.84 16 8 H 0.06 2.35 7.49 -2.39 -0.02 2.34 16 9 N -0.67 -30.51 6.06 -470.61 -2.85 -33.36 16 10 C 0.21 11.50 2.60 44.17 0.11 11.62 16 11 H -0.03 -1.88 7.47 -2.39 -0.02 -1.89 16 12 C -0.11 -5.73 9.19 71.98 0.66 -5.06 16 13 C -0.54 -30.92 8.59 25.60 0.22 -30.70 16 14 H 0.06 3.15 7.62 -2.91 -0.02 3.13 16 15 C 0.01 0.69 5.30 84.65 0.45 1.14 16 16 N -0.92 -54.23 11.32 21.45 0.24 -53.99 16 17 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.33 15.25 7.66 -89.69 -0.69 14.56 16 29 H 0.02 1.05 7.94 -2.39 -0.02 1.03 16 30 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 31 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -63.52 263.88 1.81 -61.71 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.40 Total: 16.78 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 3.47 Total: -24.34 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.61 Total: -87.35 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.47 Total: -13.33 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.52 1.81 -61.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724221175.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.609 kcal (2) G-P(sol) polarization free energy of solvation -63.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds