Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86801 * 120.00304 * 2 1 4 4 H 1.48496 * 109.47546 * 270.00443 * 3 2 1 5 5 H 1.48502 * 109.46716 * 30.00293 * 3 2 1 6 6 H 1.48496 * 109.47038 * 149.99871 * 3 2 1 7 7 C 1.38668 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99589 * 179.97438 * 7 2 1 9 9 O 1.34843 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.35576 * 117.00533 * 179.97438 * 9 7 2 11 11 C 1.39162 * 120.07368 * 180.02562 * 10 9 7 12 12 N 1.31984 * 119.94422 * 179.97438 * 11 10 9 13 13 C 1.32214 * 120.08241 * 0.02562 * 12 11 10 14 14 C 1.38438 * 120.14091 * 0.02562 * 13 12 11 15 15 Cl 1.73602 * 119.97141 * 179.97438 * 14 13 12 16 16 N 1.32273 * 120.05819 * 359.97336 * 14 13 12 17 17 H 0.97010 * 119.99616 * 359.97438 * 1 2 3 18 18 H 1.08003 * 120.02602 * 0.02562 * 11 10 9 19 19 H 1.07996 * 119.92572 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5469 1.4401 0.7000 7 6 2.0086 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3344 -2.3687 -0.0005 10 6 2.0727 -3.5058 -0.0016 11 6 1.4424 -4.7465 -0.0022 12 7 2.1636 -5.8519 -0.0038 13 6 3.4839 -5.7817 -0.0043 14 6 4.1145 -4.5493 -0.0026 15 17 5.8484 -4.4623 -0.0026 16 7 3.3972 -3.4380 -0.0010 17 1 -0.4850 0.8402 0.0004 18 1 0.3639 -4.8048 -0.0023 19 1 4.0716 -6.6878 -0.0051 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725393509.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = -11.737667 kcal Electronic energy + Delta-G solvation = -10261.618257 eV Core-core repulsion = 7998.399275 eV Total energy + Delta-G solvation = -2263.218982 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.009 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.04561 -39.35678 -37.75283 -34.96184 -34.41643 -31.47669 -27.71163 -25.41749 -24.75142 -20.66131 -19.33209 -18.15112 -17.64940 -16.72455 -16.71486 -15.99815 -15.17786 -14.73293 -13.89979 -13.70558 -13.16786 -12.81184 -12.79658 -12.45958 -12.15893 -11.92503 -11.72957 -10.89152 -10.26543 -9.64210 -8.60871 -6.28471 -0.22001 0.16638 0.63750 1.34303 1.42648 1.51935 2.08128 2.57150 2.75505 2.98892 3.35547 3.63714 3.73947 4.33630 4.51913 5.09509 5.29963 5.85382 6.23652 6.68443 6.86344 7.38688 8.58658 Molecular weight = 200.01amu Principal moments of inertia in cm(-1) A = 0.043009 B = 0.011071 C = 0.008832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.874298 B = 2528.580168 C = 3169.613127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.011 4.011 3 Si 1.021 2.979 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.404 4.404 8 H 0.103 0.897 9 O -0.184 6.184 10 C 0.265 3.735 11 C 0.007 3.993 12 N -0.389 5.389 13 C -0.021 4.021 14 C 0.172 3.828 15 Cl -0.014 7.014 16 N -0.534 5.534 17 H 0.280 0.720 18 H 0.188 0.812 19 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 -6.158 -0.010 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.211 4.211 3 Si 0.839 3.161 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.481 4.481 8 H 0.121 0.879 9 O -0.078 6.078 10 C 0.083 3.917 11 C -0.159 4.159 12 N -0.103 5.103 13 C -0.180 4.180 14 C 0.004 3.996 15 Cl 0.014 6.986 16 N -0.271 5.271 17 H 0.089 0.911 18 H 0.205 0.795 19 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.278 -5.910 -0.005 9.375 hybrid contribution 0.416 0.905 -0.007 0.996 sum 7.693 -5.005 -0.011 9.178 Atomic orbital electron populations 1.70129 1.07748 1.29619 1.46401 1.26612 0.96918 1.02539 0.95072 0.84561 0.77757 0.74285 0.79476 1.18590 1.18827 1.18298 1.21792 0.93053 0.80300 1.52981 0.87890 1.84145 1.33602 1.12292 1.77784 1.21471 0.86703 0.89844 0.93691 1.22876 1.02339 0.84777 1.05907 1.68445 1.06507 1.28524 1.06832 1.23533 0.90869 0.97122 1.06482 1.22923 0.88628 0.90497 0.97601 1.98375 1.05383 1.98601 1.96211 1.67293 1.07138 1.32666 1.19984 0.91082 0.79466 0.77559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.24 13.67 21.61 0.30 -51.95 13 2 C -0.01 -0.60 5.49 84.84 0.47 -0.13 13 3 Si 1.02 41.98 29.55 68.60 2.03 44.01 13 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 13 5 H -0.26 -10.20 7.11 99.48 0.71 -9.50 13 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 13 7 C -0.40 -23.14 9.64 67.92 0.66 -22.49 13 8 H 0.10 5.80 6.72 -2.91 -0.02 5.78 13 9 O -0.18 -10.46 9.75 -20.96 -0.20 -10.67 13 10 C 0.27 12.76 7.45 84.80 0.63 13.39 13 11 C 0.01 0.30 11.18 84.89 0.95 1.25 13 12 N -0.39 -13.83 10.49 -194.59 -2.04 -15.87 13 13 C -0.02 -0.68 11.00 84.68 0.93 0.25 13 14 C 0.17 6.31 7.28 84.67 0.62 6.92 13 15 Cl -0.01 -0.41 29.13 -2.72 -0.08 -0.49 13 16 N -0.53 -24.50 8.82 -298.97 -2.64 -27.14 13 17 H 0.28 14.73 8.31 -92.70 -0.77 13.95 13 18 H 0.19 6.67 8.06 -2.91 -0.02 6.65 13 19 H 0.21 4.68 8.06 -2.91 -0.02 4.66 13 Total: -1.00 -63.37 205.92 2.90 -60.48 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.28 Total: 2.44 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 4.25 Total: -0.81 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -4.38 Total: -94.96 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.20 Total: -10.67 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -63.37 2.90 -60.48 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725393509.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.738 kcal (2) G-P(sol) polarization free energy of solvation -63.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds