Wall clock time and date at job start Mon Mar 30 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46854 * 111.00034 * 2 1 4 4 C 1.53029 * 109.52283 * 174.15832 * 3 2 1 5 5 C 1.53126 * 109.27795 * 59.18140 * 4 3 2 6 6 C 1.52998 * 109.52128 * 182.44116 * 5 4 3 7 7 H 1.08997 * 109.47695 * 59.99499 * 6 5 4 8 8 O 1.42906 * 109.47305 * 299.99581 * 6 5 4 9 9 C 1.50705 * 109.47010 * 179.97438 * 6 5 4 10 10 H 1.07998 * 119.99979 * 359.97438 * 9 6 5 11 11 C 1.37875 * 119.99927 * 179.97438 * 9 6 5 12 12 N 1.31513 * 119.99988 * 180.02562 * 11 9 6 13 13 Si 1.86801 * 120.00003 * 359.97438 * 11 9 6 14 14 H 1.48502 * 109.47385 * 90.00301 * 13 11 9 15 15 H 1.48504 * 109.46950 * 210.00092 * 13 11 9 16 16 H 1.48496 * 109.47207 * 329.99935 * 13 11 9 17 17 C 1.53124 * 109.15878 * 302.34185 * 5 4 3 18 18 C 1.46843 * 111.00022 * 235.79122 * 2 1 3 19 19 H 1.09001 * 109.46727 * 59.99822 * 1 2 3 20 20 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47364 * 300.00369 * 1 2 3 22 22 H 1.08999 * 109.45788 * 54.14266 * 3 2 1 23 23 H 1.09001 * 109.46218 * 294.17869 * 3 2 1 24 24 H 1.08994 * 109.50822 * 299.23828 * 4 3 2 25 25 H 1.09001 * 109.50199 * 179.11868 * 4 3 2 26 26 H 1.08998 * 109.52297 * 62.25132 * 5 4 3 27 27 H 0.96695 * 113.99749 * 300.01041 * 8 6 5 28 28 H 0.96996 * 120.00244 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.50088 * 177.59509 * 17 5 4 30 30 H 1.09004 * 109.50324 * 297.71684 * 17 5 4 31 31 H 1.09001 * 109.45906 * 305.85080 * 18 2 1 32 32 H 1.08997 * 109.46476 * 65.82626 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0144 6 6 5.6361 0.4449 -0.8404 7 1 5.8643 -0.0561 0.1002 8 8 6.1947 1.7602 -0.8272 9 6 6.2260 -0.3404 -1.9834 10 1 5.5830 -0.7347 -2.7563 11 6 7.5866 -0.5554 -2.0424 12 7 8.1015 -1.2403 -3.0401 13 14 8.6989 0.1274 -0.7059 14 1 8.8386 -0.8743 0.3815 15 1 10.0360 0.4254 -1.2791 16 1 8.1064 1.3737 -0.1576 17 6 3.5181 -0.8715 -1.0208 18 6 1.9953 -0.7707 -1.1337 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.5634 1.9257 0.8330 23 1 1.7325 1.8609 -0.9376 24 1 3.7813 0.8568 1.0906 25 1 3.9098 2.3513 0.1310 26 1 3.8888 1.0355 -1.9560 27 1 6.0302 2.2655 -1.6350 28 1 9.0586 -1.3918 -3.0814 29 1 3.9099 -1.4303 -1.8707 30 1 3.7813 -1.3836 -0.0952 31 1 1.5634 -1.7715 -1.1241 32 1 1.7325 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535739772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:48 Heat of formation + Delta-G solvation = -57.673048 kcal Electronic energy + Delta-G solvation = -13413.156963 eV Core-core repulsion = 11180.162104 eV Total energy + Delta-G solvation = -2232.994860 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.79580 -36.10083 -32.75784 -32.20116 -30.41225 -27.95577 -25.64673 -22.92444 -22.52892 -20.46567 -19.19570 -17.16413 -15.50991 -14.90090 -14.74413 -14.47963 -14.39611 -13.67478 -13.04911 -12.85664 -12.56155 -12.08973 -11.97481 -11.75830 -11.37334 -11.13350 -10.74459 -10.71353 -10.30214 -9.87389 -9.80223 -9.67950 -8.86233 -8.55476 -8.20776 -8.04811 -6.07708 -4.17289 3.42507 3.51690 3.78342 4.18188 4.58207 5.19245 5.24359 5.28160 5.36791 5.46418 5.61438 5.69373 5.83236 5.84912 5.87843 6.02723 6.10198 6.22507 6.34792 6.52235 6.62042 6.77592 6.93859 7.00090 7.29716 7.36743 7.50314 7.67914 8.35303 8.88805 9.07955 9.58253 11.02923 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059995 B = 0.009839 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.595516 B = 2845.201623 C = 3134.702052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.058 3.942 4 C -0.109 4.109 5 C -0.101 4.101 6 C 0.197 3.803 7 H 0.053 0.947 8 O -0.583 6.583 9 C -0.558 4.558 10 H 0.073 0.927 11 C 0.081 3.919 12 N -0.896 5.896 13 Si 0.869 3.131 14 H -0.288 1.288 15 H -0.297 1.297 16 H -0.218 1.218 17 C -0.101 4.101 18 C 0.056 3.944 19 H 0.020 0.980 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.027 0.973 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.354 0.646 28 H 0.263 0.737 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.706 3.916 4.948 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.070 4.070 4 C -0.147 4.147 5 C -0.120 4.120 6 C 0.140 3.860 7 H 0.071 0.929 8 O -0.388 6.388 9 C -0.595 4.595 10 H 0.091 0.909 11 C -0.123 4.123 12 N -0.534 5.534 13 Si 0.696 3.304 14 H -0.215 1.215 15 H -0.224 1.224 16 H -0.140 1.140 17 C -0.139 4.139 18 C -0.072 4.072 19 H 0.038 0.962 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.045 0.955 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.200 0.800 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.211 3.438 5.900 13.127 hybrid contribution 0.149 0.614 -0.823 1.038 sum -11.062 4.052 5.077 12.828 Atomic orbital electron populations 1.22332 0.88290 1.01593 1.00062 1.61960 1.06654 1.14179 1.44116 1.22118 0.96843 0.88578 0.99466 1.21623 0.92496 1.00800 0.99805 1.21705 0.98190 0.95212 0.96866 1.19810 0.87497 0.81329 0.97375 0.92888 1.86664 1.79627 1.29629 1.42917 1.21588 0.93270 1.35211 1.09412 0.90853 1.25026 0.98492 0.93320 0.95479 1.69962 1.12666 1.39515 1.31218 0.87054 0.78860 0.82287 0.82184 1.21498 1.22406 1.14016 1.21512 0.91580 0.97669 1.03119 1.22193 0.97258 0.97156 0.90590 0.96191 0.91709 0.91816 0.91633 0.95474 0.91757 0.91461 0.92435 0.79985 0.92733 0.90152 0.91767 0.91424 0.95443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.59 60.07 0.58 0.88 16 2 N -0.54 -8.13 4.91 -242.96 -1.19 -9.33 16 3 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 4 C -0.11 -1.85 5.20 -26.65 -0.14 -1.99 16 5 C -0.10 -1.96 1.98 -90.49 -0.18 -2.14 16 6 C 0.20 4.57 1.90 -27.88 -0.05 4.52 16 7 H 0.05 1.30 7.57 -51.93 -0.39 0.91 16 8 O -0.58 -13.15 9.52 -35.23 -0.34 -13.49 16 9 C -0.56 -15.27 8.65 -34.44 -0.30 -15.57 16 10 H 0.07 2.15 6.98 -52.49 -0.37 1.79 16 11 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 12 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 13 Si 0.87 22.06 26.99 -169.99 -4.59 17.47 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 16 H -0.22 -5.40 5.30 56.52 0.30 -5.10 16 17 C -0.10 -1.88 5.08 -26.65 -0.14 -2.02 16 18 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 19 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 20 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.35 7.09 9.04 45.56 0.41 7.50 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.08 1.64 6.73 -51.93 -0.35 1.29 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 251.38 15.07 3.79 3.79 Total: -1.00 -30.35 251.38 -6.48 -36.83 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.56 Total: 3.79 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.37 Total: -12.40 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.42 Total: -35.98 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.34 Total: -13.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.59 Total: 17.47 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.35 -6.48 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535739772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.841 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds