Wall clock time and date at job start Mon Mar 30 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46854 * 111.00034 * 2 1 4 4 C 1.53029 * 109.52283 * 174.15832 * 3 2 1 5 5 C 1.53126 * 109.27795 * 59.18140 * 4 3 2 6 6 C 1.52998 * 109.52128 * 182.44116 * 5 4 3 7 7 H 1.08997 * 109.47695 * 59.99499 * 6 5 4 8 8 O 1.42906 * 109.47305 * 299.99581 * 6 5 4 9 9 C 1.50705 * 109.47010 * 179.97438 * 6 5 4 10 10 H 1.07998 * 119.99979 * 359.97438 * 9 6 5 11 11 C 1.37875 * 119.99927 * 179.97438 * 9 6 5 12 12 N 1.31513 * 119.99988 * 180.02562 * 11 9 6 13 13 Si 1.86801 * 120.00003 * 359.97438 * 11 9 6 14 14 H 1.48502 * 109.47385 * 90.00301 * 13 11 9 15 15 H 1.48504 * 109.46950 * 210.00092 * 13 11 9 16 16 H 1.48496 * 109.47207 * 329.99935 * 13 11 9 17 17 C 1.53124 * 109.15878 * 302.34185 * 5 4 3 18 18 C 1.46843 * 111.00022 * 235.79122 * 2 1 3 19 19 H 1.09001 * 109.46727 * 59.99822 * 1 2 3 20 20 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47364 * 300.00369 * 1 2 3 22 22 H 1.08999 * 109.45788 * 54.14266 * 3 2 1 23 23 H 1.09001 * 109.46218 * 294.17869 * 3 2 1 24 24 H 1.08994 * 109.50822 * 299.23828 * 4 3 2 25 25 H 1.09001 * 109.50199 * 179.11868 * 4 3 2 26 26 H 1.08998 * 109.52297 * 62.25132 * 5 4 3 27 27 H 0.96695 * 113.99749 * 300.01041 * 8 6 5 28 28 H 0.96996 * 120.00244 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.50088 * 177.59509 * 17 5 4 30 30 H 1.09004 * 109.50324 * 297.71684 * 17 5 4 31 31 H 1.09001 * 109.45906 * 305.85080 * 18 2 1 32 32 H 1.08997 * 109.46476 * 65.82626 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0144 6 6 5.6361 0.4449 -0.8404 7 1 5.8643 -0.0561 0.1002 8 8 6.1947 1.7602 -0.8272 9 6 6.2260 -0.3404 -1.9834 10 1 5.5830 -0.7347 -2.7563 11 6 7.5866 -0.5554 -2.0424 12 7 8.1015 -1.2403 -3.0401 13 14 8.6989 0.1274 -0.7059 14 1 8.8386 -0.8743 0.3815 15 1 10.0360 0.4254 -1.2791 16 1 8.1064 1.3737 -0.1576 17 6 3.5181 -0.8715 -1.0208 18 6 1.9953 -0.7707 -1.1337 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.5634 1.9257 0.8330 23 1 1.7325 1.8609 -0.9376 24 1 3.7813 0.8568 1.0906 25 1 3.9098 2.3513 0.1310 26 1 3.8888 1.0355 -1.9560 27 1 6.0302 2.2655 -1.6350 28 1 9.0586 -1.3918 -3.0814 29 1 3.9099 -1.4303 -1.8707 30 1 3.7813 -1.3836 -0.0952 31 1 1.5634 -1.7715 -1.1241 32 1 1.7325 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535739772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:48 Heat of formation + Delta-G solvation = -80.771389 kcal Electronic energy + Delta-G solvation = -13414.158583 eV Core-core repulsion = 11180.162104 eV Total energy + Delta-G solvation = -2233.996479 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.17731 -37.77035 -34.41060 -34.19832 -31.73504 -29.65405 -27.16308 -24.42122 -23.89793 -22.09776 -20.67355 -19.20986 -16.92673 -16.82714 -16.28127 -15.93691 -15.71695 -15.19608 -14.84312 -14.48595 -13.99614 -13.64117 -13.32361 -13.22926 -12.98900 -12.66844 -12.41989 -12.22307 -12.00541 -11.55491 -11.37461 -11.31733 -10.82726 -10.70628 -10.00204 -9.23408 -8.31628 -6.43788 1.39797 1.45001 1.74868 2.45512 3.05080 3.07421 3.88326 3.98530 4.01077 4.17865 4.32704 4.50009 4.54475 4.63170 4.68567 4.76710 4.85208 4.94927 5.03351 5.07695 5.13594 5.22813 5.38775 5.44243 5.62446 5.72312 6.14233 6.17870 6.23786 6.68421 7.21954 7.38870 8.82446 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059995 B = 0.009839 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.595516 B = 2845.201623 C = 3134.702052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.557 5.557 3 C 0.061 3.939 4 C -0.102 4.102 5 C -0.095 4.095 6 C 0.203 3.797 7 H 0.044 0.956 8 O -0.584 6.584 9 C -0.553 4.553 10 H 0.041 0.959 11 C 0.024 3.976 12 N -0.943 5.943 13 Si 0.934 3.066 14 H -0.288 1.288 15 H -0.299 1.299 16 H -0.205 1.205 17 C -0.099 4.099 18 C 0.064 3.936 19 H 0.026 0.974 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.367 0.633 28 H 0.264 0.736 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.109 5.169 6.444 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.066 4.066 4 C -0.140 4.140 5 C -0.114 4.114 6 C 0.146 3.854 7 H 0.062 0.938 8 O -0.391 6.391 9 C -0.590 4.590 10 H 0.059 0.941 11 C -0.175 4.175 12 N -0.583 5.583 13 Si 0.759 3.241 14 H -0.215 1.215 15 H -0.226 1.226 16 H -0.127 1.127 17 C -0.137 4.137 18 C -0.064 4.064 19 H 0.044 0.956 20 H 0.092 0.908 21 H 0.098 0.902 22 H 0.107 0.893 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.215 0.785 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -12.640 4.706 7.398 15.383 hybrid contribution 0.531 0.202 -1.338 1.453 sum -12.109 4.908 6.060 14.403 Atomic orbital electron populations 1.22406 0.86001 1.02661 1.01130 1.61941 1.08737 1.14142 1.43411 1.22092 0.95017 0.88879 1.00633 1.21533 0.94319 1.00302 0.97838 1.21574 0.95645 0.96188 0.97990 1.19642 0.89886 0.80965 0.94938 0.93788 1.86582 1.79831 1.28924 1.43722 1.21902 0.92844 1.34653 1.09625 0.94094 1.25866 1.00239 0.93882 0.97496 1.70087 1.13044 1.41717 1.33417 0.86065 0.76790 0.81925 0.79361 1.21484 1.22587 1.12656 1.21411 0.94158 0.96757 1.01340 1.22040 0.94791 0.98359 0.91176 0.95580 0.90769 0.90194 0.89285 0.95152 0.92462 0.90858 0.92928 0.78498 0.92689 0.93022 0.92615 0.90040 0.95425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.59 127.69 1.22 1.74 16 2 N -0.56 -15.04 4.91 -922.58 -4.53 -19.57 16 3 C 0.06 1.61 5.46 86.32 0.47 2.09 16 4 C -0.10 -3.22 5.20 30.65 0.16 -3.06 16 5 C -0.09 -3.61 1.98 -10.71 -0.02 -3.63 16 6 C 0.20 9.32 1.90 29.85 0.06 9.37 16 7 H 0.04 2.12 7.57 -2.39 -0.02 2.10 16 8 O -0.58 -25.25 9.52 -148.98 -1.42 -26.66 16 9 C -0.55 -30.80 8.65 25.60 0.22 -30.58 16 10 H 0.04 2.50 6.98 -2.91 -0.02 2.48 16 11 C 0.02 1.40 5.47 84.65 0.46 1.86 16 12 N -0.94 -59.07 13.96 21.45 0.30 -58.78 16 13 Si 0.93 45.75 26.99 68.60 1.85 47.60 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 16 H -0.20 -9.52 5.30 99.48 0.53 -8.99 16 17 C -0.10 -3.67 5.08 30.65 0.16 -3.51 16 18 C 0.06 1.91 5.46 86.33 0.47 2.38 16 19 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 20 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 21 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.09 1.96 8.12 -2.39 -0.02 1.94 16 23 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.07 2.22 7.77 -2.39 -0.02 2.20 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.37 14.03 9.04 -74.06 -0.67 13.36 16 28 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.05 2.18 6.73 -2.39 -0.02 2.16 16 30 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.08 2.19 8.09 -2.39 -0.02 2.17 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -64.59 251.38 -0.36 -64.96 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.23 Total: 15.79 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.20 Total: -23.34 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -4.23 Total: -78.34 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.42 Total: -26.66 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.85 Total: 47.60 kcal Total: -64.59 -0.36 -64.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535739772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.816 kcal (2) G-P(sol) polarization free energy of solvation -64.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds