Wall clock time and date at job start Mon Mar 30 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47441 * 111.00303 * 2 1 4 4 C 1.54322 * 107.23064 * 123.25655 * 3 2 1 5 5 C 1.55142 * 103.02109 * 22.28473 * 4 3 2 6 6 C 1.47852 * 110.99941 * 120.84572 * 2 1 3 7 7 H 1.09000 * 110.36879 * 332.46582 * 6 2 1 8 8 C 1.52999 * 110.37332 * 94.79919 * 6 2 1 9 9 C 1.53006 * 109.46818 * 185.28834 * 8 6 2 10 10 H 1.08998 * 109.47468 * 304.21034 * 9 8 6 11 11 O 1.42899 * 109.46936 * 64.21400 * 9 8 6 12 12 C 1.50701 * 109.46896 * 184.21063 * 9 8 6 13 13 H 1.08003 * 120.00079 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99790 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99925 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99783 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47221 * 59.99909 * 16 14 12 18 18 H 1.48507 * 109.47002 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47246 * 299.99465 * 16 14 12 20 20 H 1.09006 * 109.46772 * 54.93807 * 1 2 3 21 21 H 1.08997 * 109.47751 * 174.94020 * 1 2 3 22 22 H 1.08997 * 109.47078 * 294.94621 * 1 2 3 23 23 H 1.08996 * 109.88919 * 242.65859 * 3 2 1 24 24 H 1.08994 * 109.89066 * 3.68878 * 3 2 1 25 25 H 1.09004 * 110.70558 * 140.66755 * 4 3 2 26 26 H 1.08995 * 110.70457 * 263.72588 * 4 3 2 27 27 H 1.08997 * 110.98851 * 82.43747 * 5 4 3 28 28 H 1.09002 * 110.98867 * 206.24990 * 5 4 3 29 29 H 1.08992 * 109.47417 * 305.29042 * 8 6 2 30 30 H 1.08998 * 109.47105 * 65.29879 * 8 6 2 31 31 H 0.96701 * 114.00517 * 59.99452 * 11 9 8 32 32 H 0.97009 * 119.99698 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5135 1.2326 5 6 3.3047 0.0442 1.5439 6 6 1.9988 -0.7077 1.1851 7 1 1.2888 -0.6503 2.0102 8 6 2.3017 -2.1677 0.8423 9 6 2.7225 -2.9127 2.1108 10 1 3.5687 -2.4008 2.5690 11 8 1.6291 -2.9427 3.0303 12 6 3.1200 -4.3225 1.7568 13 1 3.0773 -4.6540 0.7298 14 6 3.5383 -5.1893 2.7441 15 7 3.5908 -4.7856 3.9946 16 14 4.0317 -6.9367 2.3052 17 1 5.1686 -6.9050 1.3504 18 1 4.4400 -7.6598 3.5364 19 1 2.8795 -7.6343 1.6801 20 1 -0.3633 0.5904 -0.8412 21 1 -0.3634 -1.0236 -0.0906 22 1 -0.3633 0.4334 0.9318 23 1 2.5698 1.5539 -0.9104 24 1 1.1755 2.0892 0.0659 25 1 3.8002 2.1032 0.9906 26 1 2.3753 1.9573 2.0685 27 1 4.1301 -0.2835 0.9120 28 1 3.5495 -0.0798 2.5988 29 1 1.4101 -2.6355 0.4251 30 1 3.1096 -2.2093 0.1118 31 1 0.8396 -3.3844 2.6885 32 1 3.8855 -5.3953 4.6892 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535774989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:16 Heat of formation + Delta-G solvation = -81.896087 kcal Electronic energy + Delta-G solvation = -13251.533223 eV Core-core repulsion = 11017.487973 eV Total energy + Delta-G solvation = -2234.045250 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.16587 -37.62413 -34.24566 -33.03379 -32.46171 -29.00315 -26.76243 -25.93092 -23.05643 -21.75427 -20.85792 -18.88953 -17.18703 -16.64686 -16.36428 -15.87341 -15.77321 -15.08151 -14.58149 -14.16307 -14.11541 -13.51825 -13.16296 -13.02569 -12.84500 -12.67867 -12.36776 -12.13891 -12.02232 -11.85906 -11.55816 -11.39145 -10.96643 -10.67024 -10.11400 -9.22051 -8.12076 -6.37518 1.40389 1.42198 1.50391 2.39745 3.07794 3.13157 3.75743 3.80730 4.09234 4.25211 4.37893 4.50568 4.54720 4.56404 4.65296 4.80740 4.85902 4.94934 5.00692 5.02547 5.06894 5.19856 5.34959 5.43009 5.64900 5.83712 6.05847 6.16655 6.24765 6.74471 7.34223 7.55974 8.91931 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.058697 B = 0.008432 C = 0.008188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.910640 B = 3319.893240 C = 3418.662268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.042 3.958 4 C -0.134 4.134 5 C -0.126 4.126 6 C 0.082 3.918 7 H 0.043 0.957 8 C -0.104 4.104 9 C 0.230 3.770 10 H 0.026 0.974 11 O -0.582 6.582 12 C -0.588 4.588 13 H 0.056 0.944 14 C 0.024 3.976 15 N -0.901 5.901 16 Si 0.958 3.042 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.268 1.268 20 H 0.084 0.916 21 H 0.059 0.941 22 H 0.025 0.975 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.354 0.646 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 10.099 -6.812 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.273 5.273 3 C -0.086 4.086 4 C -0.172 4.172 5 C -0.164 4.164 6 C -0.026 4.026 7 H 0.061 0.939 8 C -0.143 4.143 9 C 0.172 3.828 10 H 0.043 0.957 11 O -0.386 6.386 12 C -0.626 4.626 13 H 0.074 0.926 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.783 3.217 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.193 1.193 20 H 0.103 0.897 21 H 0.078 0.922 22 H 0.044 0.956 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.199 0.801 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.094 10.148 -6.720 12.558 hybrid contribution -0.300 -1.020 0.472 1.163 sum -3.393 9.128 -6.248 11.570 Atomic orbital electron populations 1.22536 0.87106 1.02195 1.00699 1.63471 1.08668 1.14738 1.40379 1.22884 0.98321 0.88754 0.98612 1.22763 1.00573 0.95737 0.98142 1.22696 0.97171 0.95778 1.00801 1.22434 0.95702 0.94042 0.90404 0.93941 1.21964 1.00188 0.93782 0.98356 1.19257 0.85228 0.92926 0.85407 0.95662 1.86477 1.24952 1.80476 1.46655 1.22088 1.47204 0.99133 0.94130 0.92584 1.25916 0.94239 1.02886 0.94751 1.70208 1.45739 1.36976 1.00851 0.85638 0.79012 0.79455 0.77628 1.19376 1.20853 1.19255 0.89686 0.92227 0.95646 0.89974 0.91312 0.89020 0.91291 0.91402 0.92370 0.93315 0.92801 0.80145 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.19 127.69 1.17 1.77 16 2 N -0.55 -16.82 5.10 -886.66 -4.52 -21.34 16 3 C 0.04 1.02 6.89 86.65 0.60 1.62 16 4 C -0.13 -3.37 6.94 31.78 0.22 -3.15 16 5 C -0.13 -4.27 5.78 31.98 0.18 -4.08 16 6 C 0.08 3.00 2.40 45.38 0.11 3.11 16 7 H 0.04 1.69 7.23 -2.39 -0.02 1.67 16 8 C -0.10 -4.48 4.66 30.60 0.14 -4.33 16 9 C 0.23 12.01 2.76 29.85 0.08 12.09 16 10 H 0.03 1.47 7.38 -2.39 -0.02 1.46 16 11 O -0.58 -30.81 12.15 -148.98 -1.81 -32.61 16 12 C -0.59 -33.22 8.76 25.60 0.22 -32.99 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.02 1.38 5.40 84.66 0.46 1.84 16 15 N -0.90 -54.71 12.84 21.45 0.28 -54.44 16 16 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H 0.08 1.79 8.13 -2.38 -0.02 1.77 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.02 0.65 7.99 -2.39 -0.02 0.63 16 23 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.07 1.42 7.58 -2.39 -0.02 1.40 16 25 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 2.34 7.97 -2.39 -0.02 2.32 16 28 H 0.06 2.14 7.99 -2.39 -0.02 2.12 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.35 8.02 -2.39 -0.02 2.33 16 31 H 0.35 16.68 9.04 -74.06 -0.67 16.01 16 32 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -64.42 261.82 -0.42 -64.85 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.41 Total: 21.53 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 3.19 Total: -24.12 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -4.24 Total: -75.78 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.81 Total: -32.61 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -64.42 -0.42 -64.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535774989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.047 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds