Wall clock time and date at job start Mon Mar 30 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47836 * 111.00136 * 2 1 4 4 C 1.54904 * 104.79970 * 146.36705 * 3 2 1 5 5 C 1.55400 * 101.73960 * 323.02060 * 4 3 2 6 6 C 1.47438 * 110.99853 * 120.84836 * 2 1 3 7 7 H 1.09003 * 109.89018 * 117.17490 * 6 2 1 8 8 C 1.52997 * 109.89358 * 356.14055 * 6 2 1 9 9 C 1.53001 * 109.47371 * 175.25747 * 8 6 2 10 10 H 1.09002 * 109.46747 * 54.82120 * 9 8 6 11 11 O 1.42902 * 109.46979 * 294.82322 * 9 8 6 12 12 C 1.50700 * 109.46900 * 174.82183 * 9 8 6 13 13 H 1.07997 * 120.00558 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99296 * 180.02562 * 12 9 8 15 15 N 1.31522 * 119.99211 * 180.02562 * 14 12 9 16 16 Si 1.86794 * 120.00533 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.46964 * 89.99750 * 16 14 12 18 18 H 1.48499 * 109.47255 * 210.00112 * 16 14 12 19 19 H 1.48501 * 109.47093 * 329.99955 * 16 14 12 20 20 H 1.09004 * 109.46820 * 297.36463 * 1 2 3 21 21 H 1.08999 * 109.47368 * 57.36352 * 1 2 3 22 22 H 1.09003 * 109.47446 * 177.36891 * 1 2 3 23 23 H 1.09004 * 110.37480 * 265.19698 * 3 2 1 24 24 H 1.09002 * 110.37338 * 27.42292 * 3 2 1 25 25 H 1.09001 * 110.99174 * 81.01415 * 4 3 2 26 26 H 1.08997 * 110.99315 * 204.80562 * 4 3 2 27 27 H 1.08997 * 110.67699 * 277.17559 * 5 4 3 28 28 H 1.08995 * 110.84791 * 153.86274 * 5 4 3 29 29 H 1.09004 * 109.46691 * 55.26206 * 8 6 2 30 30 H 1.09001 * 109.47430 * 295.26347 * 8 6 2 31 31 H 0.96692 * 114.00141 * 295.16583 * 11 9 8 32 32 H 0.97005 * 119.99404 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 0.8295 5 6 2.9183 0.2788 1.9328 6 6 1.9974 -0.7058 1.1817 7 1 2.5673 -1.5802 0.8674 8 6 0.8439 -1.1356 2.0903 9 6 1.3918 -1.9683 3.2510 10 1 2.1684 -1.4043 3.7678 11 8 1.9437 -3.1855 2.7452 12 6 0.2759 -2.2843 4.2132 13 1 -0.7242 -1.9274 4.0164 14 6 0.5318 -3.0291 5.3450 15 7 -0.4422 -3.3053 6.1845 16 14 2.2617 -3.6459 5.6859 17 1 2.9989 -2.6351 6.4860 18 1 2.1923 -4.9216 6.4428 19 1 2.9693 -3.8712 4.3999 20 1 -0.3633 0.4724 0.9127 21 1 -0.3634 0.5542 -0.8654 22 1 -0.3634 -1.0266 -0.0472 23 1 2.2148 1.7038 -1.0183 24 1 1.2881 2.0595 0.4706 25 1 4.1302 0.9280 0.2242 26 1 3.5499 2.2720 1.2634 27 1 2.3784 0.7705 2.7420 28 1 3.8019 -0.2336 2.3132 29 1 0.1339 -1.7330 1.5181 30 1 0.3415 -0.2515 2.4827 31 1 1.2928 -3.7728 2.3372 32 1 -0.2623 -3.8296 6.9805 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535774990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:18 Heat of formation + Delta-G solvation = -47.851248 kcal Electronic energy + Delta-G solvation = -13433.146995 eV Core-core repulsion = 11200.578040 eV Total energy + Delta-G solvation = -2232.568955 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.20567 -36.00837 -32.23237 -31.93086 -31.03713 -27.53133 -25.32707 -24.60645 -21.37804 -20.62467 -19.02933 -17.09697 -16.00663 -15.27996 -14.79009 -14.49563 -14.23382 -13.65128 -13.13645 -12.90048 -12.47326 -12.31456 -11.77402 -11.48430 -11.09189 -11.08747 -10.90139 -10.82203 -10.51811 -10.23380 -10.07297 -9.81980 -8.97287 -8.63965 -8.35341 -7.86162 -6.12964 -4.23690 3.38231 3.47992 3.74226 4.29846 4.53112 4.90408 4.97321 5.19766 5.22220 5.50536 5.62102 5.68574 5.76194 5.80826 5.93029 5.93659 6.10313 6.15493 6.19281 6.25935 6.32949 6.43660 6.70985 6.95644 7.27612 7.36002 7.42409 7.60834 8.29617 8.84463 9.05362 9.52029 10.97857 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051450 B = 0.010160 C = 0.009349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.082538 B = 2755.228771 C = 2994.270304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.534 5.534 3 C 0.040 3.960 4 C -0.131 4.131 5 C -0.136 4.136 6 C 0.071 3.929 7 H 0.089 0.911 8 C -0.145 4.145 9 C 0.195 3.805 10 H 0.054 0.946 11 O -0.584 6.584 12 C -0.564 4.564 13 H 0.070 0.930 14 C 0.081 3.919 15 N -0.894 5.894 16 Si 0.870 3.130 17 H -0.288 1.288 18 H -0.296 1.296 19 H -0.216 1.216 20 H 0.034 0.966 21 H 0.055 0.945 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.357 0.643 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 6.985 -10.210 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.258 5.258 3 C -0.087 4.087 4 C -0.169 4.169 5 C -0.175 4.175 6 C -0.036 4.036 7 H 0.107 0.893 8 C -0.184 4.184 9 C 0.137 3.863 10 H 0.071 0.929 11 O -0.390 6.390 12 C -0.602 4.602 13 H 0.088 0.912 14 C -0.123 4.123 15 N -0.532 5.532 16 Si 0.696 3.304 17 H -0.214 1.214 18 H -0.223 1.223 19 H -0.138 1.138 20 H 0.052 0.948 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.204 0.796 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.765 6.914 -10.303 13.681 hybrid contribution -0.241 -0.052 1.030 1.059 sum 5.523 6.862 -9.273 12.790 Atomic orbital electron populations 1.22551 0.88289 1.02287 0.99938 1.63779 1.07915 1.13454 1.40614 1.23025 0.95677 0.90294 0.99752 1.22737 0.97508 0.99262 0.97359 1.22913 1.00096 0.96785 0.97689 1.22512 0.96073 0.96691 0.88322 0.89255 1.22692 0.97058 1.00664 0.97973 1.19731 0.93834 0.82600 0.90094 0.92874 1.86613 1.40132 1.32713 1.79505 1.21591 0.96306 1.35831 1.06448 0.91164 1.25044 0.97702 0.94489 0.95096 1.69971 1.32624 1.38226 1.12330 0.87047 0.85518 0.77778 0.80051 1.21434 1.22263 1.13843 0.94769 0.92582 0.90975 0.90924 0.93971 0.91040 0.91336 0.91267 0.90842 0.91800 0.92217 0.79629 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.25 60.07 0.50 0.75 16 2 N -0.53 -8.29 5.44 -231.56 -1.26 -9.55 16 3 C 0.04 0.54 6.73 -2.30 -0.02 0.52 16 4 C -0.13 -1.68 7.08 -24.45 -0.17 -1.86 16 5 C -0.14 -2.15 5.52 -24.76 -0.14 -2.28 16 6 C 0.07 1.23 3.40 -66.72 -0.23 1.00 16 7 H 0.09 1.65 7.71 -51.93 -0.40 1.25 16 8 C -0.15 -2.83 2.97 -26.73 -0.08 -2.91 16 9 C 0.20 4.52 2.23 -27.88 -0.06 4.46 16 10 H 0.05 1.27 6.74 -51.93 -0.35 0.92 16 11 O -0.58 -13.16 9.62 -35.23 -0.34 -13.50 16 12 C -0.56 -15.71 9.30 -34.44 -0.32 -16.03 16 13 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 14 C 0.08 2.34 5.47 -17.81 -0.10 2.24 16 15 N -0.89 -27.45 13.96 55.43 0.77 -26.68 16 16 Si 0.87 21.87 26.99 -169.99 -4.59 17.28 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 19 H -0.22 -5.29 5.31 56.52 0.30 -4.99 16 20 H 0.03 0.52 6.52 -51.93 -0.34 0.18 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.07 1.07 6.73 -51.93 -0.35 0.72 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.55 7.80 -51.93 -0.41 0.14 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.14 7.77 -51.93 -0.40 0.73 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.24 6.33 -51.93 -0.33 0.91 16 30 H 0.06 1.20 6.89 -51.93 -0.36 0.84 16 31 H 0.36 7.26 9.02 45.56 0.41 7.68 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 249.02 15.07 3.75 3.75 Total: -1.00 -30.52 249.02 -6.57 -37.09 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.29 Total: 5.72 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.62 Total: -14.10 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.49 Total: -36.23 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.34 Total: -13.50 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.59 Total: 17.28 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.52 -6.57 -37.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535774990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.766 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds